Papersammlung

Synthetic Biology

Carole Lartigue, Sanjay Vashee, Mikkel A Algire, Ray-Yuan Chuang, Gwynedd A Benders, Li Ma, Vladimir N Noskov, Evgeniya A Denisova, Daniel G Gibson, Nacyra Assad-Garcia, Nina Alperovich, David W Thomas, Chuck Merryman, Clyde A Hutchison, Hamilton O Smith, J Craig Venter, John I Glass
Creating bacterial strains from genomes that have been cloned and engineered in yeast.
Science: 2009, 325(5948);1693-6
[PubMed:19696314] [WorldCat.org] [DOI] (I p)

Patrick F Suthers, Madhukar S Dasika, Vinay Satish Kumar, Gennady Denisov, John I Glass, Costas D Maranas
A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189.
PLoS Comput Biol: 2009, 5(2);e1000285
[PubMed:19214212] [WorldCat.org] [DOI] (I p)

Daniel G Gibson, Gwynedd A Benders, Cynthia Andrews-Pfannkoch, Evgeniya A Denisova, Holly Baden-Tillson, Jayshree Zaveri, Timothy B Stockwell, Anushka Brownley, David W Thomas, Mikkel A Algire, Chuck Merryman, Lei Young, Vladimir N Noskov, John I Glass, J Craig Venter, Clyde A Hutchison, Hamilton O Smith
Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.
Science: 2008, 319(5867);1215-20
[PubMed:18218864] [WorldCat.org] [DOI] (I p)

Philip Ball
Synthetic biology: designs for life.
Nature: 2007, 448(7149);32-3
[PubMed:17611530] [WorldCat.org] [DOI] (I p)

Carole Lartigue, John I Glass, Nina Alperovich, Rembert Pieper, Prashanth P Parmar, Clyde A Hutchison, Hamilton O Smith, J Craig Venter
Genome transplantation in bacteria: changing one species to another.
Science: 2007, 317(5838);632-8
[PubMed:17600181] [WorldCat.org] [DOI] (I p)

John I Glass, Nacyra Assad-Garcia, Nina Alperovich, Shibu Yooseph, Matthew R Lewis, Mahir Maruf, Clyde A Hutchison, Hamilton O Smith, J Craig Venter
Essential genes of a minimal bacterium.
Proc Natl Acad Sci U S A: 2006, 103(2);425-30
[PubMed:16407165] [WorldCat.org] [DOI] (P p)

Systematik

Jeffrey E Barrick, Dong Su Yu, Sung Ho Yoon, Haeyoung Jeong, Tae Kwang Oh, Dominique Schneider, Richard E Lenski, Jihyun F Kim
Genome evolution and adaptation in a long-term experiment with Escherichia coli.
Nature: 2009, 461(7268);1243-7
[PubMed:19838166] [WorldCat.org] [DOI] (I p)

J E Barrick, R E Lenski
Genome-wide mutational diversity in an evolving population of Escherichia coli.
Cold Spring Harb Symp Quant Biol: 2009, 74;119-29
[PubMed:19776167] [WorldCat.org] [DOI] (I p)

James A Lake
Evidence for an early prokaryotic endosymbiosis.
Nature: 2009, 460(7258);967-71
[PubMed:19693078] [WorldCat.org] [DOI] (I p)

Dan I Andersson, Diarmaid Hughes
Gene amplification and adaptive evolution in bacteria.
Annu Rev Genet: 2009, 43;167-95
[PubMed:19686082] [WorldCat.org] [DOI] (I p)

Carl Zimmer
Origins. On the origin of eukaryotes.
Science: 2009, 325(5941);666-8
[PubMed:19661396] [WorldCat.org] [DOI] (I p)

Fumito Maruyama, Mitsuhiko Kobata, Ken Kurokawa, Keishin Nishida, Atsuo Sakurai, Kazuhiko Nakano, Ryota Nomura, Shigetada Kawabata, Takashi Ooshima, Kenta Nakai, Masahira Hattori, Shigeyuki Hamada, Ichiro Nakagawa
Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content.
BMC Genomics: 2009, 10;358
[PubMed:19656368] [WorldCat.org] [DOI] (I e)

Valérie Barbe, Stéphane Cruveiller, Frank Kunst, Patricia Lenoble, Guillaume Meurice, Agnieszka Sekowska, David Vallenet, Tingzhang Wang, Ivan Moszer, Claudine Médigue, Antoine Danchin
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.
Microbiology (Reading): 2009, 155(Pt 6);1758-1775
[PubMed:19383706] [WorldCat.org] [DOI] (P p)

Howard Ochman
Radical views of the tree of life.
Environ Microbiol: 2009, 11(4);731-2
[PubMed:19236444] [WorldCat.org] [DOI] (I p)

Eugene V Koonin
Darwinian evolution in the light of genomics.
Nucleic Acids Res: 2009, 37(4);1011-34
[PubMed:19213802] [WorldCat.org] [DOI] (I p)

Christophe Fraser, Eric J Alm, Martin F Polz, Brian G Spratt, William P Hanage
The bacterial species challenge: making sense of genetic and ecological diversity.
Science: 2009, 323(5915);741-6
[PubMed:19197054] [WorldCat.org] [DOI] (I p)

Cymon J Cox, Peter G Foster, Robert P Hirt, Simon R Harris, T Martin Embley
The archaebacterial origin of eukaryotes.
Proc Natl Acad Sci U S A: 2008, 105(51);20356-61
[PubMed:19073919] [WorldCat.org] [DOI] (I p)

Eugene V Koonin
The Biological Big Bang model for the major transitions in evolution.
Biol Direct: 2007, 2;21
[PubMed:17708768] [WorldCat.org] [DOI] (I e)

Adrian Reyes-Prieto, Andreas P M Weber, Debashish Bhattacharya
The origin and establishment of the plastid in algae and plants.
Annu Rev Genet: 2007, 41;147-68
[PubMed:17600460] [WorldCat.org] [DOI] (P p)

Antoine Danchin, Gang Fang, Stanislas Noria
The extant core bacterial proteome is an archive of the origin of life.
Proteomics: 2007, 7(6);875-89
[PubMed:17370266] [WorldCat.org] [DOI] (P p)

Francesca D Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J Creevey, Berend Snel, Peer Bork
Toward automatic reconstruction of a highly resolved tree of life.
Science: 2006, 311(5765);1283-7
[PubMed:16513982] [WorldCat.org] [DOI] (I p)

J Peter Gogarten, Jeffrey P Townsend
Horizontal gene transfer, genome innovation and evolution.
Nat Rev Microbiol: 2005, 3(9);679-87
[PubMed:16138096] [WorldCat.org] [DOI] (P p)

Anne B Simonson, Jacqueline A Servin, Ryan G Skophammer, Craig W Herbold, Maria C Rivera, James A Lake
Decoding the genomic tree of life.
Proc Natl Acad Sci U S A: 2005, 102 Suppl 1(Suppl 1);6608-13
[PubMed:15851667] [WorldCat.org] [DOI] (P p)

Maria C Rivera, James A Lake
The ring of life provides evidence for a genome fusion origin of eukaryotes.
Nature: 2004, 431(7005);152-5
[PubMed:15356622] [WorldCat.org] [DOI] (I p)

Eugene V Koonin
Comparative genomics, minimal gene-sets and the last universal common ancestor.
Nat Rev Microbiol: 2003, 1(2);127-36
[PubMed:15035042] [WorldCat.org] [DOI] (P p)