RNase Y targets

Regulator	RNase Y
Overview on the regulons (wiki page) Overview on the regulons (Excel file)

RNAs that are targeted by RNase Y

RNAs directly cleaved by RNase Y

• the S-box riboswitch RNAs in vivo and in vitro PubMed
• processing of the gapA operon mRNA PubMed
• initiates the degradation of rpsO mRNA PubMed

Increased RNA amount upon RNase Y depletion

• trpE-trpD-trpC-trpF-trpB-trpA-hisC-tyrA-aroE PubMed
• yhbI-yhbJ-yhcA-yhcB-yhcC-yhcD-yhcE-yhcF-yhcG-yhcH-yhcI PubMed
• ysbA-ysbB PubMed
• yrhG PubMed
• maeA-ywkB PubMed
• nhaC PubMed
• guaC PubMed
• ydaB PubMed
• maeN PubMed
• cimH PubMed
• ynfC PubMed
• yrhE-yrhD PubMed
• yjbC-spx PubMed
• yrhF PubMed
• speD PubMed
• yhfH PubMed
• pabA-pabC PubMed
• yebC PubMed
• yurR-yurQ-frlB-frlO-frlN-frlM-frlD PubMed
• yuxJ PubMed
• lmrA-lmrB PubMed
• yrhH PubMed
• acoA-acoB-acoC-acoL PubMed
• ribU PubMed
• pbpA PubMed
• ytdI PubMed
• cggR-gapA PubMed
• yhdY PubMed
• ywcI PubMed
• yflS PubMed
• several SP-beta prophage genes, exemplified by yorW PubMed

Important publications on RNase Y targets

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J.  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 Aug 4. doi: 10.1111/j.1365-2958.2011.07777.x. [Epub ahead of print] 
PubMed:21815947