Difference between revisions of "Sandbox"
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− | * '''Description:''' | + | * '''Description:''' unknown <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
− | |'' | + | |''ynzC'' |
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || unknown |
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown |
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 10.285 |
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || | + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 231 bp, 77 aa |
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yneB]]'', ''[[tkt]]'' |
|- | |- | ||
− | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS: | + | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB13672]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' |
|- | |- | ||
− | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:ynzC_context.gif]] |
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
|- | |- | ||
Line 29: | Line 29: | ||
__TOC__ | __TOC__ | ||
− | + | <br/><br/> | |
=The gene= | =The gene= | ||
Line 35: | Line 35: | ||
=== Basic information === | === Basic information === | ||
− | * '''Locus tag:''' | + | * '''Locus tag:''' BSU17880 |
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
− | |||
− | |||
=== Database entries === | === Database entries === | ||
− | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ | + | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yneAB-ynzC.html] |
− | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13466] |
=== Additional information=== | === Additional information=== | ||
Line 54: | Line 52: | ||
=== Basic information/ Evolution === | === Basic information/ Evolution === | ||
− | * '''Catalyzed reaction/ biological activity:''' | + | * '''Catalyzed reaction/ biological activity:''' |
− | * '''Protein family:''' | + | * '''Protein family:''' UPF0291 family (according to Swiss-Prot) |
− | * '''Paralogous protein(s):''' | + | * '''Paralogous protein(s):''' |
=== Extended information on the protein === | === Extended information on the protein === | ||
Line 64: | Line 62: | ||
* '''Kinetic information:''' | * '''Kinetic information:''' | ||
− | * '''Domains:''' | + | * '''Domains:''' |
− | * '''Modification:''' | + | * '''Modification:''' |
− | * '''Cofactor(s):''' | + | * '''Cofactor(s):''' |
− | * '''Effectors of protein activity:''' | + | * '''Effectors of protein activity:''' |
− | * '''Interactions:''' | + | * '''Interactions:''' |
− | * '''Localization:''' | + | * '''Localization:''' cytoplasm (according to Swiss-Prot) |
=== Database entries === | === Database entries === | ||
− | * '''Structure:''' [http://www.rcsb.org/pdb | + | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2HEP 2HEP] (NMR), [http://www.rcsb.org/pdb/explore.do?structureId=3BHP 3BHP] |
− | * '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/ | + | * '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O31818 O31818] |
− | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+ | + | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU17880] |
* '''E.C. number:''' | * '''E.C. number:''' | ||
Line 90: | Line 88: | ||
=Expression and regulation= | =Expression and regulation= | ||
− | * '''Operon:''' | + | * '''Operon:''' |
− | * '''[[Sigma factor]]:''' | + | * '''[[[[Sigma factor]]]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
Line 98: | Line 96: | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
− | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
− | * '''Mutant:''' | + | * '''Mutant:''' |
− | * '''Expression vector:''' | + | * '''Expression vector:''' |
− | * '''lacZ fusion:''' | + | * '''lacZ fusion:''' |
− | * '''GFP fusion:''' | + | * '''GFP fusion:''' |
* '''two-hybrid system:''' | * '''two-hybrid system:''' | ||
Line 115: | Line 113: | ||
=Labs working on this gene/protein= | =Labs working on this gene/protein= | ||
− | |||
=Your additional remarks= | =Your additional remarks= | ||
Line 121: | Line 118: | ||
=References= | =References= | ||
− | <pubmed> | + | <pubmed>8,2,3,7,8,4,8,1, </pubmed> |
+ | # Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] |
Revision as of 13:46, 8 June 2009
- Description: unknown
Gene name | ynzC |
Synonyms | |
Essential | no |
Product | unknown |
Function | unknown |
MW, pI | 8 kDa, 10.285 |
Gene length, protein length | 231 bp, 77 aa |
Immediate neighbours | yneB, tkt |
Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context ![]() This image was kindly provided by SubtiList
|
Contents
The gene
Basic information
- Locus tag: BSU17880
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: UPF0291 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- Swiss prot entry: O31818
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- [[Sigma factor]]:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
U N Wiesmann, S DiDonato, N N Herschkowitz
Effect of chloroquine on cultured fibroblasts: release of lysosomal hydrolases and inhibition of their uptake.
Biochem Biophys Res Commun: 1975, 66(4);1338-43
[PubMed:4]
[WorldCat.org]
[DOI]
(I p)
R J Smith, R G Bryant
Metal substitutions incarbonic anhydrase: a halide ion probe study.
Biochem Biophys Res Commun: 1975, 66(4);1281-6
[PubMed:3]
[WorldCat.org]
[DOI]
(P p)
K S Bose, R H Sarma
Delineation of the intimate details of the backbone conformation of pyridine nucleotide coenzymes in aqueous solution.
Biochem Biophys Res Commun: 1975, 66(4);1173-9
[PubMed:2]
[WorldCat.org]
[DOI]
(I p)
K Moroi, T Sato
Comparison between procaine and isocarboxazid metabolism in vitro by a liver microsomal amidase-esterase.
Biochem Pharmacol: 1975, 24(16);1517-21
[PubMed:8]
[WorldCat.org]
[DOI]
(I p)
T R Anderson, T A Slotkin
Maturation of the adrenal medulla--IV. Effects of morphine.
Biochem Pharmacol: 1975, 24(16);1469-74
[PubMed:7]
[WorldCat.org]
[DOI]
(I p)
A B Makar, K E McMartin, M Palese, T R Tephly
Formate assay in body fluids: application in methanol poisoning.
Biochem Med: 1975, 13(2);117-26
[PubMed:1]
[WorldCat.org]
[DOI]
(P p)
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed