Difference between revisions of "Sandbox"

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* '''Description:''' glucose 1-dehydrogenase (NAD) <br/><br/>
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#REDIRECT [[YcbF]]
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{| align="right" border="1" cellpadding="2"
 
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
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|''gdh''
 
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
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|style="background:#ABCDEF;" align="center"| '''Product''' || glucose 1-dehydrogenase (NAD)
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || germination
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.082 
 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 783 bp, 261 aa
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[glcU]]'', ''[[ycnI]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12201&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:gdh_context.gif]]
 
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
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__TOC__
 
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<br/><br/>
 
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=The gene=
 
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=== Basic information ===
 
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* '''Coordinates:'''
 
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===Phenotypes of a mutant ===
 
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=== Database entries ===
 
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/glcU-gdh.html]
 
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10545]
 
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=== Additional information===
 
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=The protein=
 
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=== Basic information/ Evolution ===
 
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* '''Catalyzed reaction/ biological activity:''' Beta-D-glucose + NAD(P)<sup>+</sup> = D-glucono-1,5-lactone + NAD(P)H (according to Swiss-Prot)
 
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* '''Protein family:''' short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
 
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* '''Paralogous protein(s):'''
 
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=== Extended information on the protein ===
 
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* '''Kinetic information:'''
 
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* '''Domains:'''
 
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* '''Modification:'''
 
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* '''Cofactor(s):'''
 
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* '''Effectors of protein activity:'''
 
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* '''Interactions:'''
 
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* '''Localization:'''
 
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=== Database entries ===
 
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* '''Structure:'''
 
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* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P12310 P12310]
 
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU03930 BSU03930]
 
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* '''E.C. number:''' [http://www.expasy.org/enzyme/1.1.1.47 1.1.1.47]
 
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=== Additional information===
 
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=Expression and regulation=
 
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* '''Operon:'''
 
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* '''[[Sigma factor]]:'''
 
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* '''Regulation:'''
 
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* '''Regulatory mechanism:'''
 
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* '''Additional information:'''
 
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=Biological materials =
 
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* '''Mutant:'''
 
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* '''Expression vector:'''
 
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* '''lacZ fusion:'''
 
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* '''GFP fusion:'''
 
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* '''two-hybrid system:'''
 
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* '''Antibody:'''
 
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=Labs working on this gene/protein=
 
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=Your additional remarks=
 
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=References=
 
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# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 

Revision as of 13:42, 25 May 2009

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