Difference between revisions of "Sandbox"

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* '''Description:''' Ferrochelatase <br/><br/>
+
* '''Description:''' protoporphyrinogen IX oxidase <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''hemH''
+
|''hemY''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''hemF ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''hemG ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || Ferrochelatase
+
|style="background:#ABCDEF;" align="center"| '''Product''' || protoporphyrinogen IX oxidase
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || heme biosynthesis
 
|style="background:#ABCDEF;" align="center"|'''Function''' || heme biosynthesis
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 35 kDa, 4.617  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 51 kDa, 8.042  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 930 bp, 310 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1410 bp, 470 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[hemE]]'', ''[[hemY]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[hemH]]'', ''[[yhgD]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12853&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12854&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:hemH_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:hemY_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 43: Line 43:
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/hemEHY.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/hemEHY.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10430]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10431]
  
 
=== Additional information===
 
=== Additional information===
Line 80: Line 80:
 
* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU10130]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU10140]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''

Revision as of 01:52, 30 April 2009

  • Description: protoporphyrinogen IX oxidase

Gene name hemY
Synonyms hemG
Essential no
Product protoporphyrinogen IX oxidase
Function heme biosynthesis
MW, pI 51 kDa, 8.042
Gene length, protein length 1410 bp, 470 aa
Immediate neighbours hemH, yhgD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
HemY context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: Cytoplasm

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed