Difference between revisions of "Sandbox"

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* '''Description:''' methionine synthase <br/><br/>
 
  
{| align="right" border="1" cellpadding="2"
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|''metE''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''metC ''
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || methionine synthase
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of methionine
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 86 kDa, 4.839 
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2286 bp, 762 aa
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[guaD]]'', ''[[ispA]]''
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13175&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:metE_context.gif]]
 
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|}
 
 
__TOC__
 
 
<br/><br/>
 
 
=The gene=
 
 
=== Basic information ===
 
 
* '''Coordinates:'''
 
 
===Phenotypes of a mutant ===
 
 
=== Database entries ===
 
 
* '''DBTBS entry:''' no entry
 
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12616]
 
 
=== Additional information===
 
 
 
=The protein=
 
 
=== Basic information/ Evolution ===
 
 
* '''Catalyzed reaction/ biological activity:'''
 
 
* '''Protein family:'''
 
 
* '''Paralogous protein(s):'''
 
 
=== Extended information on the protein ===
 
 
* '''Kinetic information:'''
 
 
* '''Domains:'''
 
 
* '''Modification:''' phosphorylated on ser/ thr/ tyr [http://www.ncbi.nlm.nih.gov/pubmed/17726680 PubMed]
 
 
* '''Cofactor(s):'''
 
 
* '''Effectors of protein activity:'''
 
 
* '''Interactions:'''
 
 
* '''Localization:'''
 
 
=== Database entries ===
 
 
* '''Structure:'''
 
 
* '''Swiss prot entry:'''
 
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU13180]
 
 
* '''E.C. number:'''
 
 
=== Additional information===
 
 
:* subject to Clp-dependent proteolysis upon glucose starvation [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+17981983 PubMed]
 
=Expression and regulation=
 
 
* '''Operon:'''
 
 
* '''[[Sigma factor]]:'''
 
 
* '''Regulation:''' repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed] 
 
 
* '''Regulatory mechanism:''' [[S-box Element]]
 
 
* '''Additional information:''' subject to Clp-dependent proteolysis upon glucose starvation [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+17981983 PubMed]
 
 
=Biological materials =
 
 
* '''Mutant:'''
 
 
* '''Expression vector:'''
 
       
 
* '''lacZ fusion:'''
 
 
* '''GFP fusion:'''
 
 
* '''two-hybrid system:'''
 
 
* '''Antibody:'''
 
 
=Labs working on this gene/protein=
 
 
=Your additional remarks=
 
 
=References=
 
 
# Eymann et al. (2007) Dynamics of protein phosphorylation on Ser/Thr/Tyr in ''Bacillus subtilis''. ''Proteomics'' '''7:''' 3509-3526. [http://www.ncbi.nlm.nih.gov/pubmed/17726680 PubMed]
 
# M&#228;der et al. (2002) Transcriptome and Proteome Analysis of ''Bacillus subtilis'' Gene Expression Modulated by Amino Acid Availability. ''J. Bacteriol'' '''184:''' 1844288-4295 [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
 
# Gerth et al. (2008) Clp-dependent proteolysis down-regulates central metabolic pathways in glucose-starved Bacillus subtilis. J Bacteriol 190:321-331 [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+17981983 PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 

Revision as of 00:03, 29 April 2009