Difference between revisions of "Sandbox"

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#REDIRECT [[SubA]]
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* '''Description:''' transcription-repair coupling factor <br/><br/>
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{| align="right" border="1" cellpadding="2"
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|-
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''mfd''
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|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|-
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || transcription-repair coupling factor
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|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || promotes strand-specific DNA repair by displacing
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RNA polymerase stalled at a nucleotide lesion and directing
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the (A)BC excinuclease to the RNA damage site
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|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 133 kDa, 5.367 
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|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 3531 bp, 1177 aa
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|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabK]]'', ''[[spoVT]]''
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|-
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11831&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:mfd_context.gif]]
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|-
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|}
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__TOC__
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<br/><br/>
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=The gene=
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=== Basic information ===
 +
 
 +
* '''Coordinates:'''
 +
 
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===Phenotypes of a mutant ===
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=== Database entries ===
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* '''DBTBS entry:''' no entry
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10118]
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=== Additional information===
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 +
 
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=The protein=
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 +
=== Basic information/ Evolution ===
 +
 
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* '''Catalyzed reaction/ biological activity:'''
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* '''Protein family:'''
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* '''Paralogous protein(s):''' [[RecG]]
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=== Extended information on the protein ===
 +
 
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* '''Kinetic information:'''
 +
 
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* '''Domains:'''
 +
 
 +
* '''Modification:'''
 +
 
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* '''Cofactor(s):'''
 +
 
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* '''Effectors of protein activity:'''
 +
 
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* '''Interactions:'''
 +
 
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* '''Localization:'''
 +
 
 +
=== Database entries ===
 +
 
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* '''Structure:'''
 +
 
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* '''Swiss prot entry:'''
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU00550]
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* '''E.C. number:'''
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=== Additional information===
 +
 
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=Expression and regulation=
 +
 
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* '''Operon:'''
 +
 
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* '''[[Sigma factor]]:'''
 +
 
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* '''Regulation:'''
 +
 
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* '''Regulatory mechanism:'''
 +
 
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* '''Additional information:'''
 +
 
 +
=Biological materials =
 +
 
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* '''Mutant:'''
 +
 
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* '''Expression vector:'''
 +
       
 +
* '''lacZ fusion:'''
 +
 
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* '''GFP fusion:'''
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* '''two-hybrid system:'''
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* '''Antibody:'''
 +
 
 +
=Labs working on this gene/protein=
 +
 
 +
=Your additional remarks=
 +
 
 +
=References=
 +
 
 +
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 17:26, 21 April 2009

  • Description: transcription-repair coupling factor

Gene name mfd
Synonyms
Essential no
Product transcription-repair coupling factor
Function promotes strand-specific DNA repair by displacing

RNA polymerase stalled at a nucleotide lesion and directing

the (A)BC excinuclease to the RNA damage site

MW, pI 133 kDa, 5.367
Gene length, protein length 3531 bp, 1177 aa
Immediate neighbours yabK, spoVT
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
Mfd context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): RecG

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed