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− | * '''Description:''' similar to cell wall binding protein <br/><br/>
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− | {| align="right" border="1" cellpadding="2"
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− | |-
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− | |style="background:#ABCDEF;" align="center"|'''Gene name'''
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− | |''yabE''
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''Essential''' || no
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''Product''' || unknown
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− | |-
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− | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 9.282
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1311 bp, 437 aa
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− | |-
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− | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabD]]'', ''[[rnmV]]''
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− | |-
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− | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB11816]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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− | |-
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− | |colspan="2" | '''Genetic context''' <br/> [[Image:yabE_context.gif]]
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− | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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− | |-
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− | |}
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− | __TOC__
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− | <br/><br/>
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− |
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− | =The gene=
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− | === Basic information ===
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− | * '''Coordinates:'''
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− |
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− | ===Phenotypes of a mutant ===
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− |
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− | === Database entries ===
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− | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yabE.html]
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− | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10103]
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− |
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− | === Additional information===
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− |
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− | =The protein=
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− |
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− | === Basic information/ Evolution ===
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− | * '''Catalyzed reaction/ biological activity:'''
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− | * '''Protein family:'''
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− | * '''Paralogous protein(s):'''
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− |
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− | === Extended information on the protein ===
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− | * '''Kinetic information:'''
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− | * '''Domains:''' contains a SPS domain
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− | * '''Modification:'''
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− | * '''Cofactor(s):'''
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− | * '''Effectors of protein activity:'''
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− | * '''Interactions:'''
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− | * '''Localization:'''
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− | === Database entries ===
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− | * '''Structure:'''
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− | * '''Swiss prot entry:'''
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− | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU00400]
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− |
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− | * '''E.C. number:'''
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− |
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− | === Additional information===
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− | =Expression and regulation=
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− | * '''Operon:''' ''yabE'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
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− | * '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
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− | * '''Regulation:'''
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− | * '''Regulatory mechanism:'''
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− | * '''Additional information:''' expression is negatively controlled by a cis-acting antisense RNA that is dependent on [[SigX]] and [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
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− |
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− | =Biological materials =
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− | * '''Mutant:'''
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− | * '''Expression vector:'''
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− | * '''lacZ fusion:'''
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− | * '''GFP fusion:'''
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− | * '''two-hybrid system:'''
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− | * '''Antibody:'''
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− | =Labs working on this gene/protein=
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− | [[John Helmann]], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]
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− | =Your additional remarks=
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− | =References=
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− | # Eiamphungporn W, Helmann JD (2009) Extracytoplasmic function [[sigma factor]]s regulate expression of the ''Bacillus subtilis yabE'' gene via a cis-acting antisense RNA. ''J. Bacteriol.'' '''191:''' 1101-1105. [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
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