Difference between revisions of "Sandbox"
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| − | * '''Description:''' oligopeptide ABC transporter ( | + | * '''Description:''' oligopeptide ABC transporter (permease) <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''appB'' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || oligopeptide ABC transporter ( | + | |style="background:#ABCDEF;" align="center"| '''Product''' || oligopeptide ABC transporter (permease)) |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of oligopeptides | |style="background:#ABCDEF;" align="center"|'''Function''' || uptake of oligopeptides | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 35 kDa, 9.772 |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || | + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 951 bp, 317 aa |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[appA]]'', ''[[appC]]'' |
|- | |- | ||
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ | + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/appB_nucleotide.txt Gene sequence (+200bp) ]''' |
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ | + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/appB_protein.txt Protein sequence]''' |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" | '''Caution: The sequence for this gene in SubtiList contains errors | |colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" | '''Caution: The sequence for this gene in SubtiList contains errors | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:appB_context.gif]] |
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
|- | |- | ||
| Line 32: | Line 32: | ||
__TOC__ | __TOC__ | ||
| − | <br/><br/><br/> | + | <br/><br/><br/><br/> |
=The gene= | =The gene= | ||
| Line 46: | Line 46: | ||
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/appDFABC.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/appDFABC.html] | ||
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11088] |
=== Additional information=== | === Additional information=== | ||
| Line 57: | Line 57: | ||
* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | * '''Protein family:''' | + | * '''Protein family:''' ABC transmembrane type-1 domain |
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
| Line 83: | Line 83: | ||
* '''Swiss prot entry:''' | * '''Swiss prot entry:''' | ||
| − | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+ | + | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU11390] |
* '''E.C. number:''' | * '''E.C. number:''' | ||
| Line 116: | Line 116: | ||
=Labs working on this gene/protein= | =Labs working on this gene/protein= | ||
| − | |||
| − | |||
=Your additional remarks= | =Your additional remarks= | ||
Revision as of 04:09, 12 April 2009
- Description: oligopeptide ABC transporter (permease)
| Gene name | appB |
| Synonyms | |
| Essential | no |
| Product | oligopeptide ABC transporter (permease)) |
| Function | uptake of oligopeptides |
| MW, pI | 35 kDa, 9.772 |
| Gene length, protein length | 951 bp, 317 aa |
| Immediate neighbours | appA, appC |
| Gene sequence (+200bp) | Protein sequence |
| Caution: The sequence for this gene in SubtiList contains errors | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ABC transmembrane type-1 domain
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation: repressed by casamino acids PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
