Difference between revisions of "Sandbox"

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* '''Description:''' 5S rRNA <br/><br/>
+
* '''Description:''' ribosomal protein  <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
−
|''rrnW-5S''
+
|''rpmGB''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''rpmG ''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
+
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-5S
+
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal protein L33
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Gene length''' || 116 bp
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 5 kDa, 9.893 
−
|-|-
 
−
 
 
−
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnW-23S]]'', ''[[ctsR]]''
 
 
|-
 
|-
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnW-5S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 147 bp, 49 aa
−
|style="background:#FAF8CC;" align="center"|'''  '''
 
 
|-
 
|-
−
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnW-5S_context.gif]]
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sigH]]'', ''[[secE]]''
 +
|-
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rpmGB_nucleotide.txt    Gene sequence      (+200bp)  ]'''
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rpmGB_protein.txt Protein sequence]'''
 +
|-
 +
|colspan="2" | '''Genetic context''' <br/> [[Image:rpmGB_context.gif]]
 
|-
 
|-
 
|}
 
|}
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<br/><br/>
 
<br/><br/>
  
−
<br/><br/><br/><br/><br/>
 
 
=The gene=
 
=The gene=
  
Line 38: Line 38:
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
 +
 +
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
  
 
=== Database entries ===
 
=== Database entries ===
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* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
−
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00031]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10160]
−
 
−
* '''Structure:'''
 
  
 
=== Additional information===
 
=== Additional information===
  
  
−
 
+
=The protein=
 +
 
 +
=== Basic information/ Evolution ===
 +
 
 +
* '''Catalyzed reaction/ biological activity:'''
 +
 
 +
* '''Protein family:'''
 +
 
 +
* '''Paralogous protein(s):'''
 +
 
 +
=== Extended information on the protein ===
 +
 
 +
* '''Kinetic information:'''
 +
 
 +
* '''Domains:'''
 +
 
 +
* '''Modification:'''
 +
 
 +
* '''Cofactor(s):'''
 +
 
 +
* '''Effectors of protein activity:'''
 +
 
 +
* '''Interactions:'''
 +
 
 +
* '''Localization:'''
 +
 
 +
=== Database entries ===
 +
 
 +
* '''Structure:'''
 +
 
 +
* '''Swiss prot entry:'''
 +
 
 +
* '''KEGG entry:'''
 +
 
 +
* '''E.C. number:'''
 +
 
 +
=== Additional information===
  
 
=Expression and regulation=
 
=Expression and regulation=

Revision as of 13:49, 10 March 2009

  • Description: ribosomal protein

Gene name rpmGB
Synonyms rpmG
Essential yes PubMed
Product ribosomal protein L33
Function translation
MW, pI 5 kDa, 9.893
Gene length, protein length 147 bp, 49 aa
Immediate neighbours sigH, secE
Gene sequence (+200bp) Protein sequence
Genetic context
RpmGB context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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