Difference between revisions of "Stusti 2018"

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(→‎Riboswitch modeling: Mark Sinzger)
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= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas =
 
= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas =
  
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==  What makes RNA such a special molecule – specific chemical and structural features of RNA ==
+
==  What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl ==
 
<pubmed>  21930584</pubmed>
 
<pubmed>  21930584</pubmed>
  
−
== RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair ==
+
== RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner ==
 
<pubmed>  24219496 8156586 28979293 26109351</pubmed>
 
<pubmed>  24219496 8156586 28979293 26109351</pubmed>
  
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== Ribozymes (catalytically active RNAs) (Intro)==
+
== Ribozymes (catalytically active RNAs: Christian Thielscher) ==
−
<pubmed>  21930582</pubmed>
+
<pubmed>  21930582 22454536 14730013 10554775 21930585 6297745</pubmed>
  
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== The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology ==
+
== The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz ==
 
<pubmed> 18292779 21930591 25500179</pubmed>
 
<pubmed> 18292779 21930591 25500179</pubmed>
  
−
== The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity ==
+
== The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider ==
 
<pubmed>  24452469,26682498 25798239 </pubmed>
 
<pubmed>  24452469,26682498 25798239 </pubmed>
  
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== Protein independent ribozymes – about Hammerhead,  Varkud satellite,  hairpin ribozyme & Co ==
+
== Riboregulation and virulence, targeting by antibiotics: Theresia Eisele ==
−
<pubmed> 22454536 14730013 10554775 21930585 6297745</pubmed>
 
−
 
 
−
== RNA-based second messengers ==
 
−
<pubmed> 28420751    25616065 25682701    25869574 26280533</pubmed>
 
−
 
 
−
== Riboregulation and virulence, targeting by antibiotics ==
 
 
<pubmed>27651123      26416753
 
<pubmed>27651123      26416753
 
   27120414   27672192  28434876  28529506 28886688</pubmed>   
 
   27120414   27672192  28434876  28529506 28886688</pubmed>   
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== Riboswitches ==
 
−
<pubmed>    27607554      26655897   28121427      29618088 25794618    25794617 25848023    24769284 25571850   25964329   26118534 26494285 28206750  28375729    28396576    28541183    28455443   29537923      27798597 29135333  29420816  28611182</pubmed>
 
  
 
== Riboswitch modeling: Mark Sinzger ==
 
== Riboswitch modeling: Mark Sinzger ==
 
<pubmed>19381267 28591515 27378291</pubmed>
 
<pubmed>19381267 28591515 27378291</pubmed>
  
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== Protein- or tRNA-controlled RNA switches ==
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== RNA thermometers: Jana Horlacher ==
−
<pubmed>25959893        24816551 25583497</pubmed>
 
−
 
 
−
== RNA thermometers ==
 
 
<pubmed>25477380 27060146 </pubmed>
 
<pubmed>25477380 27060146 </pubmed>
 
   
 
   
−
== The RNA world and evolution ==
+
== The RNA world and evolution: Roman Doll ==
 
<pubmed>      25109990 25385129    25734234 25739364    26439358 17540026 29031737      28657884  19117371</pubmed>  
 
<pubmed>      25109990 25385129    25734234 25739364    26439358 17540026 29031737      28657884  19117371</pubmed>  
  
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== RNA modification ==
+
== RNA modification: Jan Michel Göring ==
 
<pubmed>      26189113    26832457  27375676
 
<pubmed>      26189113    26832457  27375676
 
     28264529 28624569</pubmed>
 
     28264529 28624569</pubmed>
  
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== RNA degradation/processing ==
+
== RNA degradation/processing: Lena Kricsfalussy-Hrabar ==
 
<pubmed>      26096689  28202538    19239894 </pubmed>  
 
<pubmed>      26096689  28202538    19239894 </pubmed>  
  
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== Regulation by non-coding RNA ==
+
== Regulation by non-coding RNA: Maxin Drömer ==
 
  <pubmed>        18981470      24667238 </pubmed>
 
  <pubmed>        18981470      24667238 </pubmed>
  
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== RNA dependent DNA Polymerases - from telomerase to retroviruses==
+
== RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel==
 
<pubmed>      18972389 26830230     28141967 </pubmed>  
 
<pubmed>      18972389 26830230     28141967 </pubmed>  
  
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== RNA dependent RNA Polymerases – the RNA replicase ==
+
== CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier ==
−
<pubmed>          29439438     18268843 9878607 </pubmed>
 
−
 
 
−
== CRISPR/Cas: Science – the bacterial “immune” system ==
 
 
<pubmed>      29358495      29169146 28375731</pubmed>
 
<pubmed>      29358495      29169146 28375731</pubmed>
  
−
== CRISPR/Cas: Application and groundbreaking  perspectives ==
+
== CRISPR/Cas: Application and groundbreaking  perspectives: Johann Liebeton ==
 
<pubmed>    26771484 </pubmed>  
 
<pubmed>    26771484 </pubmed>  
  
−
== The mysterious function and role of 6S-RNA and pRNA in bacteria ==
+
== Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol ==
−
<pubmed>    24786589  17383220 24742053 23457253</pubmed>
 
−
 
 
−
== Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer ==
 
 
<pubmed>    22016848 26186290 21957054 23166520 21930591</pubmed>  
 
<pubmed>    22016848 26186290 21957054 23166520 21930591</pubmed>  
  
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== Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways ==
 
== Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways ==
 
<pubmed>  17627883 19943183  </pubmed>
 
<pubmed>  17627883 19943183  </pubmed>
 +
 +
== RNA-based second messengers: Jörg Stülke ==
 +
<pubmed> 28420751    25616065 25682701    25869574 26280533</pubmed>
 +
 +
== Riboswitches: Jörg Stülke ==
 +
<pubmed>    27607554      26655897   28121427      29618088 25794618    25794617 25848023    24769284 25571850   25964329 25959893        24816551 25583497  26118534 26494285 28206750  28375729    28396576    28541183    28455443   29537923      27798597 29135333  29420816  28611182</pubmed>
 +
 +
== RNA dependent RNA Polymerases – the RNA replicase ==
 +
<pubmed>          29439438     18268843 9878607 </pubmed>
 +
 +
== The mysterious function and role of 6S-RNA and pRNA in bacteria ==
 +
<pubmed>    24786589  17383220 24742053 23457253</pubmed>

Revision as of 18:52, 20 July 2018

Contents

Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas

What makes RNA such a special molecule – specific chemical and structural features of RNA: Niklas Kehl

David A Hiller, Scott A Strobel
The chemical versatility of RNA.
Philos Trans R Soc Lond B Biol Sci: 2011, 366(1580);2929-35
[PubMed:21930584] [WorldCat.org] [DOI] (I p)


RNA synthesis – DNA and RNA dependent RNA polymerases and primase during transcription, replication and repair: Andrea Lehner


Ribozymes (catalytically active RNAs: Christian Thielscher)


The Ribosome - the role and function of ribosomal RNAs and the central dogma of molecular biology: Matthias Lenz


The Splicosome - the mechanism of mRNA splicing – alternative gene expression, genome size definition and phenotype plasticity: Christian Schneider


Riboregulation and virulence, targeting by antibiotics: Theresia Eisele


Riboswitch modeling: Mark Sinzger


RNA thermometers: Jana Horlacher


The RNA world and evolution: Roman Doll


RNA modification: Jan Michel Göring


RNA degradation/processing: Lena Kricsfalussy-Hrabar


Regulation by non-coding RNA: Maxin Drömer


RNA dependent DNA Polymerases - from telomerase to retroviruses: Ansgar Stenzel


CRISPR/Cas: Science – the bacterial “immune” system: Maximilian Schreier


CRISPR/Cas: Application and groundbreaking perspectives: Johann Liebeton


Synthesis, maturation and function of tRNAs – The wobble hypothesis and specific codon usage as a molecular barrier for horizontal gene transfer: Artur Fornol


Outlook: Finding function in mystery transcripts – eRNAs, long-non coding (lncRNA) and circular RNA (circRNA)


Outlook: RNA and SELEX – new prospects and applications for targeted interference with regulatory pathways


RNA-based second messengers: Jörg Stülke


Riboswitches: Jörg Stülke


RNA dependent RNA Polymerases – the RNA replicase

Sangita Venkataraman, Burra V L S Prasad, Ramasamy Selvarajan
RNA Dependent RNA Polymerases: Insights from Structure, Function and Evolution.
Viruses: 2018, 10(2);
[PubMed:29439438] [WorldCat.org] [DOI] (I e)

Kenneth K S Ng, Jamie J Arnold, Craig E Cameron
Structure-function relationships among RNA-dependent RNA polymerases.
Curr Top Microbiol Immunol: 2008, 320;137-56
[PubMed:18268843] [WorldCat.org] [DOI] (P p)

E K O'Reilly, C C Kao
Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure.
Virology: 1998, 252(2);287-303
[PubMed:9878607] [WorldCat.org] [DOI] (P p)


The mysterious function and role of 6S-RNA and pRNA in bacteria

Benedikt Steuten, Philipp G Hoch, Katrin Damm, Sabine Schneider, Karen Köhler, Rolf Wagner, Roland K Hartmann
Regulation of transcription by 6S RNAs: insights from the Escherichia coli and Bacillus subtilis model systems.
RNA Biol: 2014, 11(5);508-21
[PubMed:24786589] [WorldCat.org] [DOI] (I p)

Amy T Cavanagh, Karen M Wassarman
6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond.
Annu Rev Microbiol: 2014, 68;45-60
[PubMed:24742053] [WorldCat.org] [DOI] (I p)

Amy T Cavanagh, Karen M Wassarman
6S-1 RNA function leads to a delay in sporulation in Bacillus subtilis.
J Bacteriol: 2013, 195(9);2079-86
[PubMed:23457253] [WorldCat.org] [DOI] (I p)

Karen M Wassarman
6S RNA: a small RNA regulator of transcription.
Curr Opin Microbiol: 2007, 10(2);164-8
[PubMed:17383220] [WorldCat.org] [DOI] (P p)

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