Stusti 2018

Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas

RNA-based second messengers

Jan Gundlach, Christina Herzberg, Volkhard Kaever, Katrin Gunka, Tamara Hoffmann, Martin Weiß, Johannes Gibhardt, Andrea Thürmer, Dietrich Hertel, Rolf Daniel, Erhard Bremer, Fabian M Commichau, Jörg Stülke
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Sci Signal: 2017, 10(475);
[PubMed:28420751] [WorldCat.org] [DOI] (I e)

Christopher P Jones, Adrian R Ferré-D'Amaré
Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains.
Nat Struct Mol Biol: 2015, 22(9);679-85
[PubMed:26280533] [WorldCat.org] [DOI] (I p)

Fabian M Commichau, Achim Dickmanns, Jan Gundlach, Ralf Ficner, Jörg Stülke
A jack of all trades: the multiple roles of the unique essential second messenger cyclic di-AMP.
Mol Microbiol: 2015, 97(2);189-204
[PubMed:25869574] [WorldCat.org] [DOI] (I p)

Renée J St-Onge, Henry J Haiser, Mary R Yousef, Emma Sherwood, Natalia Tschowri, Mahmoud Al-Bassam, Marie A Elliot
Nucleotide second messenger-mediated regulation of a muralytic enzyme in Streptomyces.
Mol Microbiol: 2015, 96(4);779-95
[PubMed:25682701] [WorldCat.org] [DOI] (I p)

Gregory S Ducker, Joshua D Rabinowitz
ZMP: a master regulator of one-carbon metabolism.
Mol Cell: 2015, 57(2);203-4
[PubMed:25616065] [WorldCat.org] [DOI] (I p)

Ribozymes

Yigong Shi
Mechanistic insights into precursor messenger RNA splicing by the spliceosome.
Nat Rev Mol Cell Biol: 2017, 18(11);655-670
[PubMed:28951565] [WorldCat.org] [DOI] (I p)

Olga Novikova, Marlene Belfort
Mobile Group II Introns as Ancestral Eukaryotic Elements.
Trends Genet: 2017, 33(11);773-783
[PubMed:28818345] [WorldCat.org] [DOI] (I p)

Yigong Shi
The Spliceosome: A Protein-Directed Metalloribozyme.
J Mol Biol: 2017, 429(17);2640-2653
[PubMed:28733144] [WorldCat.org] [DOI] (I p)

Nayef Jarrous
Roles of RNase P and Its Subunits.
Trends Genet: 2017, 33(9);594-603
[PubMed:28697848] [WorldCat.org] [DOI] (I p)

David M J Lilley
How RNA acts as a nuclease: some mechanistic comparisons in the nucleolytic ribozymes.
Biochem Soc Trans: 2017, 45(3);683-691
[PubMed:28620029] [WorldCat.org] [DOI] (I p)

Jamie L Bingaman, Sixue Zhang, David R Stevens, Neela H Yennawar, Sharon Hammes-Schiffer, Philip C Bevilacqua
The GlcN6P cofactor plays multiple catalytic roles in the glmS ribozyme.
Nat Chem Biol: 2017, 13(4);439-445
[PubMed:28192411] [WorldCat.org] [DOI] (I p)

Marcos de la Peña, Inmaculada García-Robles, Amelia Cervera
The Hammerhead Ribozyme: A Long History for a Short RNA.
Molecules: 2017, 22(1);
[PubMed:28054987] [WorldCat.org] [DOI] (I e)

Jennifer Gebetsberger, Ronald Micura
Unwinding the twister ribozyme: from structure to mechanism.
Wiley Interdiscip Rev RNA: 2017, 8(3);
[PubMed:27863022] [WorldCat.org] [DOI] (I p)

Michele Felletti, Jörg S Hartig
Ligand-dependent ribozymes.
Wiley Interdiscip Rev RNA: 2017, 8(2);
[PubMed:27687155] [WorldCat.org] [DOI] (I p)

Sabine Müller, Bettina Appel, Darko Balke, Robert Hieronymus, Claudia Nübel
Thirty-five years of research into ribozymes and nucleic acid catalysis: where do we stand today?
F1000Res: 2016, 5;
[PubMed:27408700] [WorldCat.org] [DOI] (P e)

Bradley P Klemm, Nancy Wu, Yu Chen, Xin Liu, Kipchumba J Kaitany, Michael J Howard, Carol A Fierke
The Diversity of Ribonuclease P: Protein and RNA Catalysts with Analogous Biological Functions.
Biomolecules: 2016, 6(2);
[PubMed:27187488] [WorldCat.org] [DOI] (I e)

Matthew W L Lau, Adrian R Ferré-D'Amaré
In vitro evolution of coenzyme-independent variants from the glmS ribozyme structural scaffold.
Methods: 2016, 106;76-81
[PubMed:27130889] [WorldCat.org] [DOI] (I p)

Randi M Jimenez, Julio A Polanco, Andrej Lupták
Chemistry and Biology of Self-Cleaving Ribozymes.
Trends Biochem Sci: 2015, 40(11);648-661
[PubMed:26481500] [WorldCat.org] [DOI] (I p)

Arati Ramesh, Wade C Winkler
Metabolite-binding ribozymes.
Biochim Biophys Acta: 2014, 1839(10);989-994
[PubMed:24769284] [WorldCat.org] [DOI] (P p)

Bo Gong, Daniel J Klein, Adrian R Ferré-D'Amaré, Paul R Carey
The glmS ribozyme tunes the catalytically critical pK(a) of its coenzyme glucosamine-6-phosphate.
J Am Chem Soc: 2011, 133(36);14188-91
[PubMed:21848325] [WorldCat.org] [DOI] (I p)

William H McClain, Lien B Lai, Venkat Gopalan
Trials, travails and triumphs: an account of RNA catalysis in RNase P.
J Mol Biol: 2010, 397(3);627-46
[PubMed:20100492] [WorldCat.org] [DOI] (I p)

William G Scott, Monika Martick, Young-In Chi
Structure and function of regulatory RNA elements: ribozymes that regulate gene expression.
Biochim Biophys Acta: 2009, 1789(9-10);634-41
[PubMed:19781673] [WorldCat.org] [DOI] (P p)

Jennifer A Collins, Irnov Irnov, Stephanie Baker, Wade C Winkler
Mechanism of mRNA destabilization by the glmS ribozyme.
Genes Dev: 2007, 21(24);3356-68
[PubMed:18079181] [WorldCat.org] [DOI] (P p)

Leif A Kirsebom
RNase P RNA mediated cleavage: substrate recognition and catalysis.
Biochimie: 2007, 89(10);1183-94
[PubMed:17624654] [WorldCat.org] [DOI] (P p)

Wade C Winkler, Ali Nahvi, Adam Roth, Jennifer A Collins, Ronald R Breaker
Control of gene expression by a natural metabolite-responsive ribozyme.
Nature: 2004, 428(6980);281-6
[PubMed:15029187] [WorldCat.org] [DOI] (I p)

RNA degradation/ processing

John C Zinder, Christopher D Lima
Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors.
Genes Dev: 2017, 31(2);88-100
[PubMed:28202538] [WorldCat.org] [DOI] (I p)

Soraya Aït-Bara, Agamemnon J Carpousis
RNA degradosomes in bacteria and chloroplasts: classification, distribution and evolution of RNase E homologs.
Mol Microbiol: 2015, 97(6);1021-135
[PubMed:26096689] [WorldCat.org] [DOI] (I p)

Regulation by non-coding RNA

Yvonne Göpel, Muna A Khan, Boris Görke
Ménage à trois: post-transcriptional control of the key enzyme for cell envelope synthesis by a base-pairing small RNA, an RNase adaptor protein, and a small RNA mimic.
RNA Biol: 2014, 11(5);433-42
[PubMed:24667238] [WorldCat.org] [DOI] (I p)

Boris Görke, Jörg Vogel
Noncoding RNA control of the making and breaking of sugars.
Genes Dev: 2008, 22(21);2914-25
[PubMed:18981470] [WorldCat.org] [DOI] (P p)