Difference between revisions of "Methods"
(→Key references) |
(→Strain construction) |
||
| Line 22: | Line 22: | ||
==Strain construction== | ==Strain construction== | ||
| − | * introduction of markerfree deletions: {{PubMed|24140578,23916947,23911571,22422839,20057169}} | + | * introduction of markerfree deletions: {{PubMed|26238998,24140578,23916947,23911571,22422839,20057169}} |
* generation of markerfree mutations: {{PubMed|20134232,21542786,24282588}} | * generation of markerfree mutations: {{PubMed|20134232,21542786,24282588}} | ||
* an improved method for transformation: {{PubMed|24838881}} | * an improved method for transformation: {{PubMed|24838881}} | ||
Revision as of 12:44, 5 August 2015
Here you can find a list of methods for working with Bacillus subtilis:
Contents
- 1 Media
- 2 Analysis of protein-protein interactions
- 3 Analysis of membrane proteins
- 4 Antibodies
- 5 Protein expression
- 6 Strain construction
- 7 RNA analysis
- 8 Genetic work with non-standard strains
- 9 General procedures
- 10 Microscopic techniques
- 11 Transposon mutagenesis
- 12 Protein-DNA interactions
- 13 Genome engineering
- 14 Visual descriptions of methods for B. subtilis in the Journal of Visual Experimentation
- 15 Key references
Media
Analysis of protein-protein interactions
- Bacterial Two Hybrid: BACTH
- SPINE: A method to detect in vivo protein-protein interactions
- in vivo detection of protein-protein interactions using DivIVA and GFP PubMed
Analysis of membrane proteins
- application of a split green fluorescent protein reporter PubMed
Antibodies
- List of available Antibodies
Protein expression
- the LIKE system PubMed
Strain construction
- introduction of markerfree deletions: PubMed
- generation of markerfree mutations: PubMed
- an improved method for transformation: PubMed
RNA analysis
- Mechanical cell disruption and extraction of RNA from B. subtilis: Media:SOP-RNA.pdf
Genetic work with non-standard strains
- transformation of wild-type B. subtilis strains incl. NCIB3610: PubMed
- efficient electroporation of B. subtilis PubMed
- a novel transformation protocol for B. subtilis DB104 PubMed
General procedures
- Standard operation procedures (SOPs) of the SYSMO-BACELL consortium
Microscopic techniques
- Live cell imaging of B. subtilis cells using automated time-lapse microscopy PubMed
- Assay of gene expression dynamics using live cell imaging PubMed
- Visualization and quantification of gene expression heterogeneity in growing microbial cells PubMed
- GFP variants specifically optimizd for use in B. subtilis PubMed
- Quantitative analysis of cell types by comparing microscoy images PubMed
Transposon mutagenesis
- mariner transposon mutagenesis for random inducible-expression insertions and transcriptional reporter fusion insertions PubMed
Protein-DNA interactions
- ChAP-chip: A modified ChIP-chip protocol for the in vivo identification of binding sites of DNA-binding proteins PubMed
Genome engineering
- generalized bacterial genome editing using mobile group II introns and Cre-lox PubMed
- genome engineering using a synthetic gene circuit PubMed
- Ordered Gene Assembly in Bacillus subtilis (OGAB) PubMed
- A review on genome engineering:
Visual descriptions of methods for B. subtilis in the Journal of Visual Experimentation
Key references
