Difference between revisions of "YsbB"
| Line 52: | Line 52: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| − | ** ''ysbAB'' mutant is delayed in pellicle formation | + | ** ''ysbAB'' mutant is delayed in pellicle formation {{PubMed|26060272}} |
| − | ** ''ywbHG''-''yxaKC''-''ysbAB'' triple mutant is severely delayed in pellicle formation | + | ** ''ywbHG''-''yxaKC''-''ysbAB'' triple mutant is severely delayed in pellicle formation {{PubMed|26060272}} |
=== Database entries === | === Database entries === | ||
| Line 116: | Line 116: | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** ''ysbAB'' expression is induced by acetate | + | ** ''ysbAB'' expression is induced by acetate {{PubMed|26060272}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 144: | Line 144: | ||
=References= | =References= | ||
| − | <pubmed> 23175651 21815947 8969504 </pubmed> | + | <pubmed> 26060272 23175651 21815947 8969504 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 14:14, 11 June 2015
- Description: putative peptidoglycan hydrolase, probably involved in cell wall turnover
| Gene name | ysbB |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ysbB | |
| MW, pI | 24 kDa, 9.81 |
| Gene length, protein length | 693 bp, 231 aa |
| Immediate neighbours | yscB, ysbA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
cell wall degradation/ turnover
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU28900
Phenotypes of a mutant
Database entries
- BsubCyc: BSU28900
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: LrgB subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU28900
- Structure:
- UniProt: P94516
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- ysbAB expression is induced by acetate PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- GP1554 (ysbA-ysbB::spc), available in Jörg Stülke's lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Yun Chen, Kevin Gozzi, Fang Yan, Yunrong Chai
Acetic Acid Acts as a Volatile Signal To Stimulate Bacterial Biofilm Formation.
mBio: 2015, 6(3);e00392
[PubMed:26060272]
[WorldCat.org]
[DOI]
(I e)
Martin Lehnik-Habrink, Leonie Rempeters, Ákos T Kovács, Christoph Wrede, Claudia Baierlein, Heike Krebber, Oscar P Kuipers, Jörg Stülke
DEAD-Box RNA helicases in Bacillus subtilis have multiple functions and act independently from each other.
J Bacteriol: 2013, 195(3);534-44
[PubMed:23175651]
[WorldCat.org]
[DOI]
(I p)
Martin Lehnik-Habrink, Marc Schaffer, Ulrike Mäder, Christine Diethmaier, Christina Herzberg, Jörg Stülke
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y.
Mol Microbiol: 2011, 81(6);1459-73
[PubMed:21815947]
[WorldCat.org]
[DOI]
(I p)
A Wipat, N Carter, S C Brignell, B J Guy, K Piper, J Sanders, P T Emmerson, C R Harwood
The dnaB-pheA (256 degrees-240 degrees) region of the Bacillus subtilis chromosome containing genes responsible for stress responses, the utilization of plant cell walls and primary metabolism.
Microbiology (Reading): 1996, 142 ( Pt 11);3067-78
[PubMed:8969504]
[WorldCat.org]
[DOI]
(P p)
