Difference between revisions of "RmgR"

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* '''Description:''' similar to transcriptional regulator (AraC family) <br/><br/>
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* '''Description:''' similar to transcription factor ([[transcription factors of the AraC family|AraC family]]) <br/><br/>
  
 
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=References=
 
=References=
<pubmed>21630458, </pubmed>
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<pubmed>21630458, 23504016 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:17, 7 June 2014

  • Description: similar to transcription factor (AraC family)

Gene name ytdP
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ytdP
MW, pI 89 kDa, 6.339
Gene length, protein length 2316 bp, 772 aa
Immediate neighbours yteP, ytcQ
Sequences Protein DNA DNA_with_flanks
Genetic context
YtdP context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YtdP expression.png















Categories containing this gene/protein

transcription factors and their control, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU30150

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Semen A Leyn, Marat D Kazanov, Natalia V Sernova, Ekaterina O Ermakova, Pavel S Novichkov, Dmitry A Rodionov
Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis.
J Bacteriol: 2013, 195(11);2463-73
[PubMed:23504016] [WorldCat.org] [DOI] (I p)

Elodie Marchadier, Rut Carballido-López, Sophie Brinster, Céline Fabret, Peggy Mervelet, Philippe Bessières, Marie-Françoise Noirot-Gros, Vincent Fromion, Philippe Noirot
An expanded protein-protein interaction network in Bacillus subtilis reveals a group of hubs: Exploration by an integrative approach.
Proteomics: 2011, 11(15);2981-91
[PubMed:21630458] [WorldCat.org] [DOI] (I p)