Difference between revisions of "Pel"
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07560&redirect=T BSU07560] | ||
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/pel.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/pel.html] | ||
| Line 95: | Line 96: | ||
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07560&redirect=T BSU07560] | ||
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2O1D 2O1D] (bound to trisaccharide), [http://www.rcsb.org/pdb/explore.do?structureId=1BN8 1BN8] | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2O1D 2O1D] (bound to trisaccharide), [http://www.rcsb.org/pdb/explore.do?structureId=1BN8 1BN8] | ||
Revision as of 13:11, 2 April 2014
- Description: pectate lyase C
| Gene name | pel |
| Synonyms | |
| Essential | no |
| Product | pectate lyase C |
| Function | degradation of polygalacturonic acid |
| Gene expression levels in SubtiExpress: pel | |
| MW, pI | 45 kDa, 8.421 |
| Gene length, protein length | 1260 bp, 420 aa |
| Immediate neighbours | yflT, yflS |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
CcpA regulon, ComA regulon, TnrA regulon
The gene
Basic information
- Locus tag: BSU07560
Phenotypes of a mutant
Database entries
- BsubCyc: BSU07560
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends (according to Swiss-Prot)
- Protein family: polysaccharide lyase 1 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- extracellular (signal peptide), major constituent of the secretome PubMed
Database entries
- BsubCyc: BSU07560
- UniProt: P39116
- KEGG entry: [3]
- E.C. number: 4.2.2.2
Additional information
Expression and regulation
- Operon: pel PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Original publications
