Difference between revisions of "YdaF"
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* '''Description:''' similar to acetyltransferase <br/><br/> | * '''Description:''' similar to acetyltransferase <br/><br/> | ||
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=== Database entries === | === Database entries === | ||
| − | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1NSL 1NSL] | + | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1NSL 1NSL] {{PubMed|15468321}} |
* '''UniProt:''' [http://www.uniprot.org/uniprot/P96579 P96579] | * '''UniProt:''' [http://www.uniprot.org/uniprot/P96579 P96579] | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaF_473174_473725_1 ydaF] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaF_473174_473725_1 ydaF] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigB]] {{PubMed|10220166}} | + | * '''[[Sigma factor]]:''' [[SigB]] {{PubMed|10220166}} |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | <pubmed> 10220166 18840696</pubmed> | + | <pubmed> 10220166 18840696 15468321 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:47, 18 August 2013
- Description: similar to acetyltransferase
| Gene name | ydaF |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ydaF | |
| MW, pI | 20 kDa, 5.564 |
| Gene length, protein length | 549 bp, 183 aa |
| Immediate neighbours | ydaE, ydaG |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), poorly characterized/ putative enzymes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04210
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: N-acetyltransferase domain (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- UniProt: P96579
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696]
[WorldCat.org]
[DOI]
(I p)
Joseph S Brunzelle, Ruiying Wu, Sergey V Korolev, Frank R Collart, Andrzej Joachimiak, Wayne F Anderson
Crystal structure of Bacillus subtilis YdaF protein: a putative ribosomal N-acetyltransferase.
Proteins: 2004, 57(4);850-3
[PubMed:15468321]
[WorldCat.org]
[DOI]
(I p)
Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166]
[WorldCat.org]
[DOI]
(P p)
