Difference between revisions of "CwlJ"
| Line 1: | Line 1: | ||
| − | * '''Description:''' cell wall hydrolase <br/><br/> | + | * '''Description:''' spore coat protein, cell wall hydrolase <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || cell wall hydrolase | + | |style="background:#ABCDEF;" align="center"| '''Product''' || spore coat protein, cell wall hydrolase |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || spore germination | |style="background:#ABCDEF;" align="center"|'''Function''' || spore germination | ||
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | {{SubtiWiki regulon|[[SigE regulon]]}} | + | {{SubtiWiki regulon|[[SigE regulon]]}}, |
| + | {{SubtiWiki regulon|[[SigK regulon]]}}, | ||
| + | {{SubtiWiki regulon|[[SpoIIID regulon]]}} | ||
=The gene= | =The gene= | ||
| Line 92: | Line 94: | ||
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
** outer edge of the spore cortex {{PubMed|12177332}} | ** outer edge of the spore cortex {{PubMed|12177332}} | ||
| + | ** inner spore coat, localization depends on [[SafA]] {{PubMed|22171814}} | ||
=== Database entries === | === Database entries === | ||
| Line 111: | Line 114: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cwlJ_282469_282897_1 cwlJ] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cwlJ_282469_282897_1 cwlJ] {{PubMed|22383849}} | ||
| − | * '''[[Sigma factor]]:''' [[SigE]] {{PubMed|9515903,15699190}} | + | * '''[[Sigma factor]]:''' [[SigE]] {{PubMed|9515903,15699190}}, [[SigK]] {{PubMed|15383836}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** expressed | + | ** expressed during sporulation in the mother cell ([[SigE]], [[SigK]], [[SpoIIID]]) {{PubMed|15383836,9515903,15699190}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[SpoIIID]]: transcription activation {{PubMed|15383836}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 141: | Line 145: | ||
=References= | =References= | ||
| − | <pubmed>16936016,11807087,9515903,15699190,15317760,11466292,20435722 , 12177332 23543708 23746146</pubmed> | + | <pubmed>16936016,11807087,9515903,15699190,15317760,11466292,20435722 , 12177332 23543708 23746146 15383836 22171814 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:21, 13 August 2013
- Description: spore coat protein, cell wall hydrolase
| Gene name | cwlJ |
| Synonyms | ycbQ |
| Essential | no |
| Product | spore coat protein, cell wall hydrolase |
| Function | spore germination |
| Gene expression levels in SubtiExpress: cwlJ | |
| MW, pI | 16 kDa, 9.354 |
| Gene length, protein length | 426 bp, 142 aa |
| Immediate neighbours | ycbP, ycbR |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
cell wall/ other, sporulation proteins, germination
This gene is a member of the following regulons
SigE regulon, SigK regulon, SpoIIID regulon
The gene
Basic information
- Locus tag: BSU02600
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: cwlJ family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P42249
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
