Difference between revisions of "YmcB"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA maturation | |style="background:#ABCDEF;" align="center"|'''Function''' || tRNA maturation | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17010 ymcB] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 57 kDa, 6.873 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 57 kDa, 6.873 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kbl]]'', ''[[ymcA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[kbl]]'', ''[[ymcA]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17010 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:YmcB_context.png]] | |colspan="2" | '''Genetic context''' <br/> [[Image:YmcB_context.png]] | ||
Revision as of 12:53, 13 May 2013
- Description: tRNA methylthiotransferase
| Gene name | ymcB |
| Synonyms | |
| Essential | no |
| Product | tRNA methylthiotransferase |
| Function | tRNA maturation |
| Gene expression levels in SubtiExpress: ymcB | |
| MW, pI | 57 kDa, 6.873 |
| Gene length, protein length | 1527 bp, 509 aa |
| Immediate neighbours | kbl, ymcA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17010
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: modifies N(6)-isopentenyladenosine (i(6)A) to 2-methylthio-N(6)-isopentenyladenosine (ms(2)i(6)A) in tRNA PubMed
- Protein family: MiaB subfamily (according to Swiss-Prot)
- Paralogous protein(s): YqeV
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cytoplasm (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31778
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant: GP1109 (spc), available in Stülke lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
