Difference between revisions of "ScoC"
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|style="background:#ABCDEF;" align="center"|'''Function''' || transition state regulator | |style="background:#ABCDEF;" align="center"|'''Function''' || transition state regulator | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09990 scoC] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/ScoC ScoC] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/ScoC ScoC] | ||
| Line 25: | Line 25: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhaI]]'', ''[[yhaH]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhaI]]'', ''[[yhaH]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09990 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09990 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09990 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:hpr_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:hpr_context.gif]] | ||
Revision as of 12:28, 13 May 2013
- Description: transcriptional repressor of genes expressed in the transition phase
| Gene name | scoC |
| Synonyms | hpr, catA |
| Essential | no |
| Product | transcriptional repressor (MarR family) |
| Function | transition state regulator |
| Gene expression levels in SubtiExpress: scoC | |
| Interactions involving this protein in SubtInteract: ScoC | |
| Regulation of this protein in SubtiPathways: Biofilm, Alternative nitrogen sources | |
| MW, pI | 23 kDa, 5.188 |
| Gene length, protein length | 609 bp, 203 aa |
| Immediate neighbours | yhaI, yhaH |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
transcription factors and their control, transition state regulators, phosphoproteins
This gene is a member of the following regulons
AbrB regulon, SalA regulon, SenS regulon
The ScoC regulon
The gene
Basic information
- Locus tag: BSU09990
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- phosphorylated on Arg-3 PubMed
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 2FXA
- UniProt: P11065
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: scoC PubMed
- Sigma factor:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant: Strain OM213 of Ogura MA, et al PubMed, genotype trpC2 scoC::pMutin-scoC leuC7, available as BGSC 1A918
- Expression vector: for expression, purification in E. coli with N-terminal His-tag, pRSETA available in Gerth lab
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
