Difference between revisions of "YdiO"
Raphael2215 (talk | contribs) |
|||
| Line 13: | Line 13: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || BsuM DNA modification | |style="background:#ABCDEF;" align="center"|'''Function''' || BsuM DNA modification | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06060 ydiO] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 7.659 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 7.659 | ||
| Line 21: | Line 21: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydzV]]'', ''[[ydiP]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydzV]]'', ''[[ydiP]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU06060 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU06060 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU06060 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ydiO_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ydiO_context.gif]] | ||
Revision as of 12:16, 13 May 2013
- Description: similar to DNA-3-methyladenine glycosidase II
| Gene name | ydiO |
| Synonyms | |
| Essential | yes PubMed |
| Product | unknown |
| Function | BsuM DNA modification |
| Gene expression levels in SubtiExpress: ydiO | |
| MW, pI | 48 kDa, 7.659 |
| Gene length, protein length | 1281 bp, 427 aa |
| Immediate neighbours | ydzV, ydiP |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
DNA restriction/ modification, essential genes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU06060
Phenotypes of a mutant
essential PubMed, mutation is only possible in a ydiR, ydiS, or ydjA background (i. e., in the absence of the BsuM DNA restriction system) PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34939
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Tomoko Maehara, Mitsuhiro Itaya, Mitsuo Ogura, Teruo Tanaka
Effect of Bacillus subtilis BsuM restriction-modification on plasmid transfer by polyethylene glycol-induced protoplast fusion.
FEMS Microbiol Lett: 2011, 325(1);49-55
[PubMed:22092861]
[WorldCat.org]
[DOI]
(I p)
Nora Au, Elke Kuester-Schoeck, Veena Mandava, Laura E Bothwell, Susan P Canny, Karen Chachu, Sierra A Colavito, Shakierah N Fuller, Eli S Groban, Laura A Hensley, Theresa C O'Brien, Amish Shah, Jessica T Tierney, Louise L Tomm, Thomas M O'Gara, Alexi I Goranov, Alan D Grossman, Charles M Lovett
Genetic composition of the Bacillus subtilis SOS system.
J Bacteriol: 2005, 187(22);7655-66
[PubMed:16267290]
[WorldCat.org]
[DOI]
(P p)
Hideyuki Ohshima, Satoshi Matsuoka, Kei Asai, Yoshito Sadaie
Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg.
J Bacteriol: 2002, 184(2);381-9
[PubMed:11751814]
[WorldCat.org]
[DOI]
(P p)
