Difference between revisions of "Main Page"
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− | + | <big>Welcome to '''''Subti''Wiki'''! </big> - ''Bacillus subtilis'' annotation the "wiki" way!<br/> | |
+ | [[File:Start_page_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/]] | ||
+ | [[File:Playground_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Playground]] | ||
+ | [[File:Wish_List_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Wish_List]] | ||
+ | <br/> | ||
+ | <big>'''Contact:'''</big> [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail] | ||
+ | <br/> | ||
+ | <big>'''Upcoming events:'''</big> | ||
+ | * The [http://www.grampositiveconference.org/ 7th International Conference on Gram-positive Microorganisms] (17th International Conference on Bacilli) organized by [[Marta Perego]], [[Jim Hoch]], and [[Hendrik Szurmant]] is going to take place from June 23 - 27, 2013, in [http://www.montecatini.it/english/ Montecatini Terme] in lovely Tuscany, Italy, [http://www.grampositiveconference.org/ conference website], [mailto:fchizer@scripps.edu contact] | ||
+ | * [[Past conferences]] | ||
− | + | <br/> | |
+ | <big>'''New: Subtiwiki is now on [http://www.facebook.com/pages/SubtiWiki/201847669864806 Facebook] - please give it a +1!'''</big> | ||
− | + | <br/> | |
+ | <big>'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the [http://nar.oxfordjournals.org/content/40/D1/D1278.full.pdf+html 2012 Database issue of Nucleic Acids Research]'''</big> | ||
+ | <pubmed> 22096228 </pubmed> | ||
+ | |||
+ | <br/> | ||
+ | <big>'''Paper of the month: September 2012'''</big> | ||
+ | * [http://www.ncbi.nlm.nih.gov/pubmed/22864117 Chiba and Ito] studied how the translation of [[YidC2]], a membrane protein biogenesis factor, is controlled by [[SpoIIIJ]] availability via ribosome stalling of the ''[[mifM]]'' mRNA. | ||
+ | * '''Relevant ''Subti''Wiki pages:''' [[Koreaki Ito]], [[translation]], [[YidC2]], [[SpoIIIJ]], ''[[mifM]]'' | ||
+ | <pubmed> 22864117 </pubmed> | ||
+ | * [[Previous papers of the month]] | ||
+ | |||
+ | <br/> | ||
+ | <big>'''New procedure for account creation:'''</big> | ||
+ | * Due to massive spam attacks, we had to change our policy for the creation of accounts. If you want to create an account, just [mailto:jstuelk@gwdg.de send me a mail]. We will create the account for you as quickly as possible, then you can change your password. This does not affect existing accounts, which remain active. <br/> | ||
+ | * '''Please remember that all members of the ''Bacillus'' community are invited to create accounts and to contribute to ''Subti''Wiki!''' | ||
+ | <br/><br/> | ||
+ | <big>'''News in ''Subti''Wiki:'''</big> | ||
+ | * '''August 2012''': [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express], the new compagnon of ''Subti''Wiki devoted to gene expression is online! Try it out! | ||
+ | * '''May 2012:''' updated Excel files that map all genes to [[categories]] and [[regulons]] as well as the general updated identity mapping of all genes were uploaded. | ||
+ | * '''April 2012:''' Links for expression data under 104 different conditions (based on [http://www.ncbi.nlm.nih.gov/pubmed/22383849 Nicolas ''et al''., 2012]) have been added to the expression section of the individual gene pages | ||
+ | * '''April 2011:''' [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact], a presentation of [[protein-protein interactions]] in ''B. subtilis'', is online! | ||
+ | * '''December 2010:''' [http://cellpublisher.gobics.de/scp.html SubtiCellPublisher] allows the conversion of CellDesigner diagrams to navigatable presentations in the style of [[SubtiPathways]] | ||
+ | * '''December 2010:''' all genes are linked to [[regulons]], and the pages of the [[regulons]] provide an overview on all genes that are members of this specific regulon. | ||
+ | * '''December 2010:''' all genes/proteins are linked to [[categories]], and the pages of the [[categories]] provide an overview on all genes/proteins that are members of this specific category. | ||
+ | * '''August 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources], [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis], [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling], and [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] were uploaded to [[SubtiPathways]] | ||
+ | * '''March 2010:''' novel [[plasmids]] for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, [[pGP1087]] and [[pGP1331]]) | ||
+ | |||
+ | <br/> | ||
+ | {| border="0" cellpadding="1" | ||
+ | |width="300"|<big>'''Genes''' (examples)</big> | ||
+ | |width="300"|<big>'''Additional pages'''</big> | ||
+ | |- style="height:20px" | ||
+ | | ''[[spo0A]]'' || '''[http://subtipathways.uni-goettingen.de ''Subti''Pathways]''' | ||
+ | |- | ||
+ | | ''[[glnA]]'' || '''[[Lists of genes, proteins and RNAs]]''' | ||
+ | |- | ||
+ | | ''[[rny]]'' || '''[[Categories]]''' | ||
+ | |- | ||
+ | | ''[[psdA]]'' || '''[[Regulons]]''' | ||
+ | |- | ||
+ | | ''[[pckA]]'' || '''[[methods]]''' | ||
+ | |- | ||
+ | | ''[[dnaA]]'' || '''[[metabolism]]''' | ||
+ | |- | ||
+ | | ''[[rnpA]]'' || '''[[protein-protein interactions]]''' | ||
+ | |- | ||
+ | | ''[[sigB]]'' || '''[[genome-wide analyses]]''' | ||
+ | |- | ||
+ | | ''[[ptkA]]'' || '''[[list of plasmids]]''' | ||
+ | |- | ||
+ | | ''[[mreC]]'' || '''[[labs working on Bacillus|labs working on ''Bacillus'']]''' | ||
+ | |- | ||
+ | | ''[[ccpA]]'' || '''[[the people behind SubtiWiki|the people behind ''Subti''Wiki]]''' | ||
+ | |- | ||
+ | | ''[[sr1]]'' || '''[[template]]''' | ||
+ | |- | ||
+ | | || | ||
+ | |} | ||
+ | <br> | ||
+ | <big>'''Publications describing ''Subti''Wiki and ''Subti''Pathways:'''</big> | ||
+ | <div style="width:73%"><pubmed>20157485 19959575</pubmed></div> | ||
+ | <br><br><br><br><br><br> |
Revision as of 07:59, 19 September 2012
Welcome to SubtiWiki! - Bacillus subtilis annotation the "wiki" way!
Contact: General Microbiology, University of Göttingen, send mail
Upcoming events:
- The 7th International Conference on Gram-positive Microorganisms (17th International Conference on Bacilli) organized by Marta Perego, Jim Hoch, and Hendrik Szurmant is going to take place from June 23 - 27, 2013, in Montecatini Terme in lovely Tuscany, Italy, conference website, contact
- Past conferences
New: Subtiwiki is now on Facebook - please give it a +1!
Now online: A description of SubtiWiki, SubtiPathways, and SubtInteract in the 2012 Database issue of Nucleic Acids Research
Paper of the month: September 2012
- Chiba and Ito studied how the translation of YidC2, a membrane protein biogenesis factor, is controlled by SpoIIIJ availability via ribosome stalling of the mifM mRNA.
- Relevant SubtiWiki pages: Koreaki Ito, translation, YidC2, SpoIIIJ, mifM
New procedure for account creation:
- Due to massive spam attacks, we had to change our policy for the creation of accounts. If you want to create an account, just send me a mail. We will create the account for you as quickly as possible, then you can change your password. This does not affect existing accounts, which remain active.
- Please remember that all members of the Bacillus community are invited to create accounts and to contribute to SubtiWiki!
News in SubtiWiki:
- August 2012: SubtiExpress, the new compagnon of SubtiWiki devoted to gene expression is online! Try it out!
- May 2012: updated Excel files that map all genes to categories and regulons as well as the general updated identity mapping of all genes were uploaded.
- April 2012: Links for expression data under 104 different conditions (based on Nicolas et al., 2012) have been added to the expression section of the individual gene pages
- April 2011: SubtInteract, a presentation of protein-protein interactions in B. subtilis, is online!
- December 2010: SubtiCellPublisher allows the conversion of CellDesigner diagrams to navigatable presentations in the style of SubtiPathways
- December 2010: all genes are linked to regulons, and the pages of the regulons provide an overview on all genes that are members of this specific regulon.
- December 2010: all genes/proteins are linked to categories, and the pages of the categories provide an overview on all genes/proteins that are members of this specific category.
- August 2010: several new pathway maps including Utilization of other nitrogen sources, Biotin synthesis, Murein recycling, and Protein secretion were uploaded to SubtiPathways
- March 2010: novel plasmids for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, pGP1087 and pGP1331)
Publications describing SubtiWiki and SubtiPathways:
Lope A Flórez, Sebastian F Roppel, Arne G Schmeisky, Christoph R Lammers, Jörg Stülke
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki.
Database (Oxford): 2009, 2009;bap012
[PubMed:20157485]
[WorldCat.org]
[DOI]
(I p)
Christoph R Lammers, Lope A Flórez, Arne G Schmeisky, Sebastian F Roppel, Ulrike Mäder, Leendert Hamoen, Jörg Stülke
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis.
Microbiology (Reading): 2010, 156(Pt 3);849-859
[PubMed:19959575]
[WorldCat.org]
[DOI]
(I p)