Difference between revisions of "YukD"
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* '''Operon:''' ''[[yukE]]-[[yukD]]-[[yukC]]-[[yukB]]-[[yueB]]'' {{PubMed|15576783}} | * '''Operon:''' ''[[yukE]]-[[yukD]]-[[yukC]]-[[yukB]]-[[yueB]]'' {{PubMed|15576783}} | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yukD_3275832_3276071_-1 yukD] {{PubMed|22383849}} |
| + | |||
| + | * '''Sigma factor:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Revision as of 16:31, 16 April 2012
- Description: putative bacteriocin
| Gene name | yukD |
| Synonyms | |
| Essential | no |
| Product | putative bacteriocin |
| Function | unknown |
| MW, pI | 8 kDa, 6.311 |
| Gene length, protein length | 237 bp, 79 aa |
| Immediate neighbours | yukC, yukE |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
biosynthesis of antibacterial compounds
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU31900
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure: 2BPS
- UniProt: P71071
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Anne de Jong, Sacha A F T van Hijum, Jetta J E Bijlsma, Jan Kok, Oscar P Kuipers
BAGEL: a web-based bacteriocin genome mining tool.
Nucleic Acids Res: 2006, 34(Web Server issue);W273-9
[PubMed:16845009]
[WorldCat.org]
[DOI]
(I p)
Carlos São-José, Catarina Baptista, Mário A Santos
Bacillus subtilis operon encoding a membrane receptor for bacteriophage SPP1.
J Bacteriol: 2004, 186(24);8337-46
[PubMed:15576783]
[WorldCat.org]
[DOI]
(P p)
