Difference between revisions of "YkgB"
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| − | * '''Description:''' general stress protein <br/><br/> | + | * '''Description:''' putative 6-phosphogluconolactonase, general stress protein <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || putative 6-phosphogluconolactonase |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || pentose phosphate pathway |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 38 kDa, 5.154 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 38 kDa, 5.154 | ||
| Line 52: | Line 52: | ||
=== Basic information/ Evolution === | === Basic information/ Evolution === | ||
| − | * '''Catalyzed reaction/ biological activity:''' | + | * '''Catalyzed reaction/ biological activity:''' the corresponding protein of ''E. coli'' is the 6-phosphogluconolactonase {{PubMed|15576773}} |
* '''Protein family:''' cycloisomerase 2 family (according to Swiss-Prot) | * '''Protein family:''' cycloisomerase 2 family (according to Swiss-Prot) | ||
| Line 118: | Line 118: | ||
=References= | =References= | ||
| − | <pubmed>10482513 </pubmed> | + | <pubmed>10482513 15576773 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 14:09, 29 November 2010
- Description: putative 6-phosphogluconolactonase, general stress protein
| Gene name | ykgB |
| Synonyms | |
| Essential | no |
| Product | putative 6-phosphogluconolactonase |
| Function | pentose phosphate pathway |
| MW, pI | 38 kDa, 5.154 |
| Gene length, protein length | 1047 bp, 349 aa |
| Immediate neighbours | ykfD, ykgA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU13010
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: the corresponding protein of E. coli is the 6-phosphogluconolactonase PubMed
- Protein family: cycloisomerase 2 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: O34499
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Lynn C Thomason, Donald L Court, Atin R Datta, Rita Khanna, Judah L Rosner
Identification of the Escherichia coli K-12 ybhE gene as pgl, encoding 6-phosphogluconolactonase.
J Bacteriol: 2004, 186(24);8248-53
[PubMed:15576773]
[WorldCat.org]
[DOI]
(P p)
A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513]
[WorldCat.org]
[DOI]
(P p)
