Difference between revisions of "CydD"

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(Expression and regulation)
(Expression and regulation)
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''[[cydA]]-[[cydB]]-[[cydC]]-[[cydD]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/16207915 PubMed]
+
* '''Operon:'''  
 
+
** ''[[cydA]]-[[cydB]]-[[cydC]]-[[cydD]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/16207915 PubMed]
''cydD'' [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+16497325 PubMed]
+
** ''cydD'' [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+16497325 PubMed]
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
 
+
** ''[[cydA]]'':
''[[cydA]]'':
+
** ''[[cydD]]'': [[SigF]] [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+16497325 PubMed]
 
 
''[[cydD]]'': [[SigF]] [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+16497325 PubMed]
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 05:15, 12 June 2009

  • Description: ABC transporter required for expression of cytochrome bd (ATP-binding protein)

Gene name cydD
Synonyms yxkN
Essential no
Product ABC transporter (ATP-binding protein)
Function required for expression of cytochrome bd
MW, pI 64 kDa, 6.221
Gene length, protein length 1725 bp, 575 aa
Immediate neighbours yxkO, cydC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
CydD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU38730

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed by glucose (CcpA)
    • induced under anaerobic conditions (Rex) PubMed
    • expressed under anaerobic conditions (ResD) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed