Difference between revisions of "ScoC"

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* '''Description:''' write here <br/><br/>
  
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{| align="right" border="1" cellpadding="2"
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|-
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''scoC''
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|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''hpr, catA''
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|-
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|style="background:#ABCDEF;" align="center"| '''Essential''' ||
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|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator (MarR family)
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|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || negative regulation of sporulation and extracellular proteases genes (''[[aprE]], [[nprE]], [[sin]]'')
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|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.188 
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|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 609 bp, 203 aa
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|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' ||
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|-
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/hpr_nucleotide.txt    Gene sequence      (+200bp)  ]'''
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/hpr_protein.txt Protein sequence]'''
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|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:hpr_context.gif]]
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|-
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|}
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__TOC__
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<br/><br/>
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=The gene=
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=== Basic information ===
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* '''Coordinates:'''
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===Phenotypes of a mutant ===
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=== Database entries ===
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/hpr.html]
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10659]
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=== Additional information===
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=The protein=
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=== Basic information/ Evolution ===
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* '''Catalyzed reaction/ biological activity:'''
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* '''Protein family:'''
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* '''Paralogous protein(s):'''
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=== Extended information on the protein ===
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* '''Kinetic information:'''
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* '''Domains:'''
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* '''Modification:'''
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* '''Cofactor(s):'''
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* '''Effectors of protein activity:'''
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* '''Interactions:'''
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* '''Localization:'''
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=== Database entries ===
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* '''Structure:'''
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* '''Swiss prot entry:'''
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* '''KEGG entry:'''
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* '''E.C. number:'''
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=== Additional information===
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=Expression and regulation=
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* '''Operon:'''
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* '''Sigma factor:'''
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* '''Regulation:'''
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* '''Regulatory mechanism:'''
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* '''Additional information:'''
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=Biological materials =
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* '''Mutant:'''
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* '''Expression vector:'''
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* '''lacZ fusion:'''
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* '''GFP fusion:'''
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* '''two-hybrid system:'''
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* '''Antibody:'''
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=Labs working on this gene/protein=
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=Your additional remarks=
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=References=
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# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 10:05, 4 February 2009

  • Description: write here

Gene name scoC
Synonyms hpr, catA
Essential
Product transcriptional regulator (MarR family)
Function negative regulation of sporulation and extracellular proteases genes (aprE, nprE, sin)
MW, pI 23 kDa, 5.188
Gene length, protein length 609 bp, 203 aa
Immediate neighbours
Gene sequence (+200bp) Protein sequence
Genetic context
Hpr context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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