Difference between revisions of "Sandbox"

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* '''Description:''' methionine synthase <br/><br/>
 
  
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{| align="right" border="1" cellpadding="2"
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
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|''metE''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''metC ''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
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|style="background:#ABCDEF;" align="center"| '''Product''' || methionine synthase
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of methionine
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 86 kDa, 4.839 
 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2286 bp, 762 aa
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[guaD]]'', ''[[ispA]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13175&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:metE_context.gif]]
 
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
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|}
 
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__TOC__
 
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<br/><br/>
 
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=The gene=
 
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=== Basic information ===
 
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* '''Coordinates:'''
 
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===Phenotypes of a mutant ===
 
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=== Database entries ===
 
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* '''DBTBS entry:''' no entry
 
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12616]
 
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=== Additional information===
 
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=The protein=
 
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=== Basic information/ Evolution ===
 
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* '''Catalyzed reaction/ biological activity:'''
 
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* '''Protein family:'''
 
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* '''Paralogous protein(s):'''
 
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=== Extended information on the protein ===
 
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* '''Kinetic information:'''
 
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* '''Domains:'''
 
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* '''Modification:''' phosphorylated on ser/ thr/ tyr [http://www.ncbi.nlm.nih.gov/pubmed/17726680 PubMed]
 
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* '''Cofactor(s):'''
 
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* '''Effectors of protein activity:'''
 
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* '''Interactions:'''
 
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* '''Localization:'''
 
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=== Database entries ===
 
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* '''Structure:'''
 
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* '''Swiss prot entry:'''
 
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU13180]
 
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* '''E.C. number:'''
 
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=== Additional information===
 
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:* subject to Clp-dependent proteolysis upon glucose starvation [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+17981983 PubMed]
 
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=Expression and regulation=
 
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* '''Operon:'''
 
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* '''[[Sigma factor]]:'''
 
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* '''Regulation:''' repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed] 
 
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* '''Regulatory mechanism:''' [[S-box Element]]
 
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* '''Additional information:''' subject to Clp-dependent proteolysis upon glucose starvation [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+17981983 PubMed]
 
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=Biological materials =
 
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* '''Mutant:'''
 
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* '''Expression vector:'''
 
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* '''lacZ fusion:'''
 
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* '''GFP fusion:'''
 
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* '''two-hybrid system:'''
 
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* '''Antibody:'''
 
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=Labs working on this gene/protein=
 
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=Your additional remarks=
 
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=References=
 
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# Eymann et al. (2007) Dynamics of protein phosphorylation on Ser/Thr/Tyr in ''Bacillus subtilis''. ''Proteomics'' '''7:''' 3509-3526. [http://www.ncbi.nlm.nih.gov/pubmed/17726680 PubMed]
 
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# M&#228;der et al. (2002) Transcriptome and Proteome Analysis of ''Bacillus subtilis'' Gene Expression Modulated by Amino Acid Availability. ''J. Bacteriol'' '''184:''' 1844288-4295 [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
 
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# Gerth et al. (2008) Clp-dependent proteolysis down-regulates central metabolic pathways in glucose-starved Bacillus subtilis. J Bacteriol 190:321-331 [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+17981983 PubMed]
 
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# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 

Revision as of 00:03, 29 April 2009