Difference between revisions of "Sandbox"

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* '''Description:''' response regulator aspartate phosphatase <br/><br/>
+
* '''Description:''' 23S rRNA <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''rapG''
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|''rrnG-23S''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yycM ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || response regulator aspartate phosphatase
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|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-23S
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of sporulation initiation
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|style="background:#ABCDEF;" align="center"|'''Function''' || translation
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 4.807 
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|style="background:#ABCDEF;" align="center"| '''Gene length''' || 2928 bp
 +
|-|-
 +
 
 +
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnG-16S]]'', ''[[rrnG-5S]]''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1095 bp, 365 aa
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnG-23S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 +
|style="background:#FAF8CC;" align="center"|'''  '''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yycN]]'', ''[[phrG]]''
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|colspan="2" | '''Genetic context''' <br/> [[Image:rrnG-23S_context.gif]]
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|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16067&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
−
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rapG_context.gif]]
 
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
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<br/><br/>
 
<br/><br/>
  
 +
<br/><br/><br/><br/><br/>
 
=The gene=
 
=The gene=
  
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=== Database entries ===
 
=== Database entries ===
  
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rapG-phrG.html]
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* '''DBTBS entry:''' no entry
  
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11466]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00105]
 +
 +
* '''Structure:'''
  
 
=== Additional information===
 
=== Additional information===
  
  
−
=The protein=
+
 
−
 
 
−
=== Basic information/ Evolution ===
 
−
 
 
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* '''Catalyzed reaction/ biological activity:'''
 
−
 
 
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* '''Protein family:'''
 
−
 
 
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* '''Paralogous protein(s):'''
 
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=== Extended information on the protein ===
 
−
 
 
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* '''Kinetic information:'''
 
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* '''Domains:'''
 
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* '''Modification:'''
 
−
 
 
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* '''Cofactor(s):'''
 
−
 
 
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* '''Effectors of protein activity:'''
 
−
 
 
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* '''Interactions:'''
 
−
 
 
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* '''Localization:'''
 
−
 
 
−
=== Database entries ===
 
−
 
 
−
* '''Structure:'''
 
−
 
 
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* '''Swiss prot entry:'''
 
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU40300]
 
−
 
 
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* '''E.C. number:'''
 
−
 
 
−
=== Additional information===
 
  
 
=Expression and regulation=
 
=Expression and regulation=
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* '''Operon:'''  
 
* '''Operon:'''  
  
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* '''[[Sigma factor]]:'''  
+
* '''Sigma factor:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 15:19, 25 April 2009

  • Description: 23S rRNA

Gene name rrnG-23S
Synonyms
Essential no
Product ribosomal RNA-23S
Function translation
Gene length 2928 bp
Immediate neighbours rrnG-16S, rrnG-5S
Gene sequence (+200bp)
Genetic context
RrnG-23S context.gif
This image was kindly provided by SubtiList








The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]
  • Structure:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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