Difference between revisions of "Sandbox"

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* '''Description:''' similar to cell wall binding protein <br/><br/>
 
  
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{| align="right" border="1" cellpadding="2"
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
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|''yabE''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
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|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 9.282 
 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1311 bp, 437 aa
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabD]]'', ''[[rnmV]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11816&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yabE_context.gif]]
 
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
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|}
 
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__TOC__
 
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<br/><br/>
 
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=The gene=
 
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=== Basic information ===
 
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* '''Coordinates:'''
 
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===Phenotypes of a mutant ===
 
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=== Database entries ===
 
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yabE.html]
 
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10103]
 
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=== Additional information===
 
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=The protein=
 
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=== Basic information/ Evolution ===
 
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* '''Catalyzed reaction/ biological activity:'''
 
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* '''Protein family:'''
 
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* '''Paralogous protein(s):'''
 
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=== Extended information on the protein ===
 
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* '''Kinetic information:'''
 
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* '''Domains:''' contains a SPS domain
 
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* '''Modification:'''
 
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* '''Cofactor(s):'''
 
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* '''Effectors of protein activity:'''
 
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* '''Interactions:'''
 
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* '''Localization:'''
 
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=== Database entries ===
 
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* '''Structure:'''
 
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* '''Swiss prot entry:'''
 
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU00400]
 
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* '''E.C. number:'''
 
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=== Additional information===
 
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=Expression and regulation=
 
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* '''Operon:''' ''yabE'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
 
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* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
 
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* '''Regulation:'''
 
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* '''Regulatory mechanism:'''
 
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* '''Additional information:''' expression is negatively controlled by a cis-acting antisense RNA that is dependent on [[SigX]] and [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
 
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=Biological materials =
 
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* '''Mutant:'''
 
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* '''Expression vector:'''
 
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* '''lacZ fusion:'''
 
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* '''GFP fusion:'''
 
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* '''two-hybrid system:'''
 
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* '''Antibody:'''
 
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=Labs working on this gene/protein=
 
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[[John Helmann]], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]
 
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=Your additional remarks=
 
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=References=
 
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# Eiamphungporn W, Helmann JD (2009) Extracytoplasmic function [[sigma factor]]s regulate expression of the ''Bacillus subtilis yabE'' gene via a cis-acting antisense RNA. ''J. Bacteriol.'' '''191:''' 1101-1105. [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
 

Revision as of 16:25, 21 April 2009