Difference between revisions of "Sandbox"

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* '''Description:''' polyketide synthase <br/><br/>
+
* '''Description:''' polyketide synthase of type I <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''pksR''
+
|''pksN''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''pksP ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || polyketide synthase
+
|style="background:#ABCDEF;" align="center"| '''Product''' || polyketide synthase of type I
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || polyketide synthesis  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || polyketide synthesis  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 284 kDa, 5.437  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 609 kDa, 5.471  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 7629 bp, 2543 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 16464 bp, 5488 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pksN]]'', ''[[pksS]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pksM]]'', ''[[pksR]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
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|-
 
|-
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:pksR_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:pksN_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
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* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12654]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12652]
  
 
=== Additional information===
 
=== Additional information===
Line 82: Line 82:
 
* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU17220]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU17210]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''

Revision as of 15:22, 15 April 2009

  • Description: polyketide synthase of type I

Gene name pksN
Synonyms pksP
Essential no
Product polyketide synthase of type I
Function polyketide synthesis
MW, pI 609 kDa, 5.471
Gene length, protein length 16464 bp, 5488 aa
Immediate neighbours pksM, pksR
Hier soll was neues rein
Genetic context
PksN context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed