Difference between revisions of "Sandbox"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
−
* '''Description:''' RNA polymerase ECF-type [[sigma factor]] SigX <br/><br/>
+
* '''Description:''' anti-SigX <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
−
|''sigX''
+
|''rsiX''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ypuM ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ypuN ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Product''' || RNA polymerase ECF-type [[sigma factor]] SigX
+
|style="background:#ABCDEF;" align="center"| '''Product''' || anti-SigX  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"|'''Function''' || cell surface properties
+
|style="background:#ABCDEF;" align="center"|'''Function''' || control of SigX activity
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 6.086  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 5.452  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 582 bp, 194 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1104 bp, 368 aa  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rsiX]]'', ''[[resE]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[aroC]]'', ''[[sigX]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
Line 24: Line 24:
 
|-
 
|-
 
|-
 
|-
−
|colspan="2" | '''Genetic context''' <br/> [[Image:sigX_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:rsiX_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 31: Line 31:
 
__TOC__
 
__TOC__
  
−
<br/><br/>
+
<br/><br/><br/><br/>
  
 
=The gene=
 
=The gene=
Line 45: Line 45:
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sigX-rsiX.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sigX-rsiX.html]
  
−
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10536]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10537]
  
 
=== Additional information===
 
=== Additional information===
Line 59: Line 59:
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
−
 
−
=== Genes controlled by SigX ===
 
−
 
−
''[[pbpX]]'', ''[[csbB]]'', ''[[abh]]'', ''[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]]''
 
  
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===
Line 86: Line 82:
 
* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
−
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU23100]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU23090]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''
Line 94: Line 90:
 
=Expression and regulation=
 
=Expression and regulation=
  
−
* '''Operon:''' '' [[sigX]]-[[rsiX]]''
+
* '''Operon:''' ''[[sigX]]-[[rsiX]]''
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
Line 124: Line 120:
 
=References=
 
=References=
  
−
# Huang X, Helmann JD. (1998) Identification of target promoters for the Bacillus subtilis sigma X factor using a consensus-directed search. ''J Mol Biol.'' '''279:''' 165-173. [http://www.ncbi.nlm.nih.gov/sites/entrez/9636707 PubMed]
 
−
# Serizawa M, Kodama K, Yamamoto H, Kobayashi K, Ogasawara N, Sekiguchi J. (2005) Functional analysis of the YvrGHb two-component system of ''Bacillus subtilis'': identification of the regulated genes by DNA microarray and northern blot analyses. ''Biosci. Biotechnol. Biochem.'' '''69:''' 2155-2169. [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
 
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 15:16, 15 April 2009

  • Description: anti-SigX

Gene name rsiX
Synonyms ypuN
Essential no
Product anti-SigX
Function control of SigX activity
MW, pI 41 kDa, 5.452
Gene length, protein length 1104 bp, 368 aa
Immediate neighbours aroC, sigX
Hier soll was neues rein
Genetic context
RsiX context.gif
This image was kindly provided by SubtiList





The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
Retrieved from "http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Sandbox&oldid=53650"