Difference between revisions of "Sandbox"

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* '''Description:''' similar to transcriptional regulator (LysR family) <br/><br/>
+
* '''Description:''' unknown <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
|-
+
||-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yybE''
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|''yyaB''
|-
+
||-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
+
||-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
|-
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||-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown  
 
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown  
|-
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||-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|-
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||-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 7.299  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 10.415  
|-
+
||-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 834 bp, 278 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 438 bp, 146 aa  
|-
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||-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yybF]]'', ''[[yybD]]''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[soj]]'', ''[[noc]]''
|-
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||-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
|-
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||-
|colspan="2" | '''Genetic context''' <br/> [[Image:yybE_context.gif]]
+
|-||-
 +
|colspan="2" | '''Genetic context''' <br/> [[Image:yyaB_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
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||-
 
|}
 
|}
  
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=== Database entries ===
 
=== Database entries ===
  
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yybEDC.html]
+
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yyaB.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10026]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10056]
  
 
=== Additional information===
 
=== Additional information===
Line 80: Line 81:
 
* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU40670]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget|-bin/www_bget?bsu+BSU40980]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''
Line 108: Line 109:
 
* '''GFP fusion:'''
 
* '''GFP fusion:'''
  
* '''two-hybrid system:'''  
+
* '''two|-hybrid system:'''  
  
 
* '''Antibody:'''
 
* '''Antibody:'''
Line 118: Line 119:
 
=References=
 
=References=
  
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
+
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page|-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 14:26, 15 April 2009

  • Description: unknown

- Gene name yyaB - Synonyms - Essential no - Product unknown - Function unknown - MW, pI 16 kDa, 10.415 - Gene length, protein length 438 bp, 146 aa - Immediate neighbours soj, noc - Hier soll was neues rein -
Genetic context
YyaB context.gif
This image was kindly provided by SubtiList
-



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two|-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page|-page. PubMed