Difference between revisions of "Sandbox"

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* '''Description:''' "fatty acid beta-hydroxylating cytochrome P450, hydroxylates myristic acid to beta-hydroxymyristic <br/><br/>
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 10.415 
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{| align="right" border="1" cellpadding="2"
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
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|''cypC''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ybdT ''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Product''' || fatty acid beta-hydroxylating cytochrome P450
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of beta-hydroxy fatty acid
 
 
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|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 6.468 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 438 bp, 146 aa
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1251 bp, 417 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[soj]]'', ''[[noc]]''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybxI]]'', ''[[ybyB]]''
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yyaB_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yyaB_protein.txt Protein sequence]'''
 
|-
 
|-
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/cypC_nucleotide.txt    Gene sequence      (+200bp)  ]'''
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|colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" | '''Caution: The sequence for this gene in SubtiList contains errors
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/cypC_protein.txt Protein sequence]'''
 
 
|-
 
|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:cypC_context.gif]]
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|colspan="2" | '''Genetic context''' <br/> [[Image:yyaB_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
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__TOC__
 
__TOC__
  
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<br/><br/><br/><br/>
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<br/><br/>
  
 
=The gene=
 
=The gene=
Line 42: Line 29:
 
=== Database entries ===
 
=== Database entries ===
  
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cypC.html]
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yyaB.html]
  
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12729]
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10056]
  
 
=== Additional information===
 
=== Additional information===
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* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU02100]
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU40980]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''
Line 91: Line 78:
 
* '''Operon:'''  
 
* '''Operon:'''  
  
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* '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
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* '''[[Sigma factor]]:'''  
  
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* '''Regulation:''' induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
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* '''Regulation:'''  
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
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* '''Additional information:'''
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* '''Additional information:'''  
  
 
=Biological materials =
 
=Biological materials =
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=References=
 
=References=
  
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# H&ouml;per et al. (2005) Comprehensive Characterization of the Contribution of Individual [[SigB]]-Dependent General Stress Genes to Stress Resistance of ''Bacillus subtilis''. J. Bact. '''187:''' 2810-2826  [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
 
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 11:43, 15 April 2009

|style="background:#ABCDEF;" align="center"| MW, pI || 16 kDa, 10.415 |- |style="background:#ABCDEF;" align="center"| Gene length, protein length || 438 bp, 146 aa |- |style="background:#ABCDEF;" align="center"|Immediate neighbours || soj, noc |- |style="background:#FAF8CC;" align="center"|Gene sequence (+200bp) |style="background:#FAF8CC;" align="center"|Protein sequence |- |colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" | Caution: The sequence for this gene in SubtiList contains errors |- |colspan="2" | Genetic context
YyaB context.gif

This image was kindly provided by SubtiList

|- |}



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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