Difference between revisions of "Sandbox"

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* '''Description:''' spore coat protein <br/><br/>
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* '''Description:''' ABC-type antimicrobial peptide transporter (permease) <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''yeeK''
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|''yknZ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || spore coat protein
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|style="background:#ABCDEF;" align="center"| '''Product''' || ABC-type antimicrobial peptide transporter (permease)
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
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|style="background:#ABCDEF;" align="center"|'''Function''' || resistence against SdpC toxin
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 15 kDa, 6.852  
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 4.682  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 435 bp, 145 aa  
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1191 bp, 397 aa  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yeeI]]'', ''[[yezE]]''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yknY]]'', ''[[fruR]]''
 
|-
 
|-
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yeeK_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yknZ_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yeeK_protein.txt Protein sequence]'''
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yknZ_protein.txt Protein sequence]'''
 
|-
 
|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:yeeK_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:yknZ_context.gif]]
 
|-
 
|-
 
|}
 
|}
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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
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+
 
 
=== Database entries ===
 
=== Database entries ===
  
−
* '''DBTBS entry:''' no entry
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yknWXYZ.html]
  
−
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12825]
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13246]
  
 
=== Additional information===
 
=== Additional information===
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* '''Interactions:'''
 
* '''Interactions:'''
  
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* '''Localization:''' assembles into the spore integument [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
+
* '''Localization:'''
  
 
=== Database entries ===
 
=== Database entries ===
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=== Additional information===
 
=== Additional information===
−
 
−
[[CotE]], [[SafA]], and [[SpoVID]] are required for proper localization, clolocalizes with [[YabG]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
 
  
 
=Expression and regulation=
 
=Expression and regulation=
  
−
* '''Operon:''' ''yeeK'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
+
* '''Operon:'''  
  
−
* '''Sigma factor:''' [[SigK]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
+
* '''Sigma factor:'''  
  
−
* '''Regulation:''' expression startts 5 hrs after the onset of sporulation, activated by [[GerE]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
+
* '''Regulation:'''  
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
−
* '''Additional information:'''
+
* '''Additional information:'''  
  
 
=Biological materials =
 
=Biological materials =
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=References=
 
=References=
  
−
# Takamatsu et al. (2009) Expression of yeeK during Bacillus subtilis sporulation and localization of YeeK to the inner spore coat using fluorescence microscopy''J. Bacteriol.'' '''191:''' 1220-1229. [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
+
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 13:08, 16 March 2009

  • Description: ABC-type antimicrobial peptide transporter (permease)

Gene name yknZ
Synonyms
Essential no
Product ABC-type antimicrobial peptide transporter (permease)
Function resistence against SdpC toxin
MW, pI 41 kDa, 4.682
Gene length, protein length 1191 bp, 397 aa
Immediate neighbours yknY, fruR
Gene sequence (+200bp) Protein sequence
Genetic context
YknZ context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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