Difference between revisions of "Sandbox"

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* '''Description:''' write here <br/><br/>
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* '''Description:''' tRNA-Met
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''mfd''
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|''trnSL-Met1''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || transcription-repair coupling factor
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|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Met
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || promotes strand-specific DNA repair by displacing
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|style="background:#ABCDEF;" align="center"|'''Function''' || translation
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RNA polymerase stalled at a nucleotide lesion and directing
 
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the (A)BC excinuclease to the RNA damage site
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 133 kDa, 5.367 
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 3531 bp, 1177 aa
 
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabK]]'', ''[[spoVT]]''
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|style="background:#ABCDEF;" align="center"| '''Gene length''' || 77 bp
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|-|-
 +
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabR]]'', ''[[trnSL-Glu1]]''
 
|-
 
|-
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/mfd_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnSL-Met1_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/mfd_protein.txt Protein sequence]'''
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|style="background:#FAF8CC;" align="center"|''' '''
 
|-
 
|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:mfd_context.gif]]
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|colspan="2" | '''Genetic context''' <br/> [[Image:trnSL-Met1_context.gif]]
 
|-
 
|-
 
|}
 
|}
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<br/><br/>
 
<br/><br/>
  
 +
<br/><br/><br/><br/><br/>
 
=The gene=
 
=The gene=
  
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* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10118]
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00015]
 +
 +
* '''Structure:'''
  
 
=== Additional information===
 
=== Additional information===
  
  
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=The protein=
+
 
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=== Basic information/ Evolution ===
 
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* '''Catalyzed reaction/ biological activity:'''
 
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* '''Protein family:'''
 
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* '''Paralogous protein(s):'''
 
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=== Extended information on the protein ===
 
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* '''Kinetic information:'''
 
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* '''Domains:'''
 
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* '''Modification:'''
 
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* '''Cofactor(s):'''
 
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* '''Effectors of protein activity:'''
 
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* '''Interactions:'''
 
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* '''Localization:'''
 
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=== Database entries ===
 
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* '''Structure:'''
 
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* '''Swiss prot entry:'''
 
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* '''KEGG entry:'''
 
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* '''E.C. number:'''
 
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=== Additional information===
 
  
 
=Expression and regulation=
 
=Expression and regulation=

Revision as of 12:48, 10 March 2009

  • Description: tRNA-Met
Gene name trnSL-Met1
Synonyms
Essential no
Product transfer RNA-Met
Function translation
Gene length 77 bp
Immediate neighbours yabR, trnSL-Glu1
Gene sequence (+200bp)
Genetic context
TrnSL-Met1 context.gif








The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]
  • Structure:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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