Difference between revisions of "Stusti 2018"

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== Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas ==
+
= Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas =
  
* Riboswitches
+
== Riboswitches ==
 
<pubmed>    27607554      26655897
 
<pubmed>    27607554      26655897
  
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     29135333  29420816  28611182</pubmed>
 
     29135333  29420816  28611182</pubmed>
  
* Riboregulation and virulence, targeting by antibiotics
+
== Riboregulation and virulence, targeting by antibiotics ==
 
<pubmed>27651123      26416753
 
<pubmed>27651123      26416753
 
   27120414
 
   27120414
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   27672192  28434876  28529506 28886688</pubmed>   
 
   27672192  28434876  28529506 28886688</pubmed>   
  
* RNA-based second messengers
+
== RNA-based second messengers ==
 
<pubmed>28420751    25616065
 
<pubmed>28420751    25616065
  
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   26280533</pubmed>   
 
   26280533</pubmed>   
  
* Ribozymes
+
== Ribozymes ==
 
<pubmed>27130889      27408700
 
<pubmed>27130889      27408700
  
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     28818345  28951565  26481500</pubmed>
 
     28818345  28951565  26481500</pubmed>
  
* Protein- or tRNA-controlled RNA switches
+
== Protein- or tRNA-controlled RNA switches ==
 
<pubmed>25959893        24816551
 
<pubmed>25959893        24816551
  
 
  25583497</pubmed>
 
  25583497</pubmed>
 
      
 
      
* RNA thermometers
+
== RNA thermometers ==
 
<pubmed>25477380</pubmed>
 
<pubmed>25477380</pubmed>
 
      
 
      
  
* The RNA world and evolution
+
== The RNA world and evolution ==
 
<pubmed>      17540026
 
<pubmed>      17540026
 
   29031737      28657884
 
   29031737      28657884
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* RNA modification
+
== RNA modification ==
 
<pubmed>      26832457  27375676
 
<pubmed>      26832457  27375676
  
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   28624569</pubmed>
 
   28624569</pubmed>
  
* RNA degradation/ processing
+
== RNA degradation/ processing ==
 
<pubmed>        28202538
 
<pubmed>        28202538
  
 
</pubmed>
 
</pubmed>
  
* CRISPR/Cas: Science
+
== CRISPR/Cas: Science ==
 
<pubmed>        28375731</pubmed>
 
<pubmed>        28375731</pubmed>
  
  
  
* CRISPR/Cas: Application
+
== CRISPR/Cas: Application ==
 
<pubmed>        </pubmed>
 
<pubmed>        </pubmed>

Revision as of 16:24, 11 April 2018

Die Sprache der RNA: Von RNA-Schaltern zu CRISPR/ Cas

Riboswitches


Riboregulation and virulence, targeting by antibiotics

Juan J Quereda, Pascale Cossart
Regulating Bacterial Virulence with RNA.
Annu Rev Microbiol: 2017, 71;263-280
[PubMed:28886688] [WorldCat.org] [DOI] (I p)

Petra Dersch, Muna A Khan, Sabrina Mühlen, Boris Görke
Roles of Regulatory RNAs for Antibiotic Resistance in Bacteria and Their Potential Value as Novel Drug Targets.
Front Microbiol: 2017, 8;803
[PubMed:28529506] [WorldCat.org] [DOI] (P e)

Hao Wang, Paul A Mann, Li Xiao, Charles Gill, Andrew M Galgoci, John A Howe, Artjohn Villafania, Christopher M Barbieri, Juliana C Malinverni, Xinwei Sher, Todd Mayhood, Megan D McCurry, Nicholas Murgolo, Amy Flattery, Matthias Mack, Terry Roemer
Dual-Targeting Small-Molecule Inhibitors of the Staphylococcus aureus FMN Riboswitch Disrupt Riboflavin Homeostasis in an Infectious Setting.
Cell Chem Biol: 2017, 24(5);576-588.e6
[PubMed:28434876] [WorldCat.org] [DOI] (I p)

Andreas Matern, Danielle Pedrolli, Stephanie Großhennig, Jörgen Johansson, Matthias Mack
Uptake and Metabolism of Antibiotics Roseoflavin and 8-Demethyl-8-Aminoriboflavin in Riboflavin-Auxotrophic Listeria monocytogenes.
J Bacteriol: 2016, 198(23);3233-3243
[PubMed:27672192] [WorldCat.org] [DOI] (I e)

Aaron M Nuss, Ann Kathrin Heroven, Petra Dersch
RNA Regulators: Formidable Modulators of Yersinia Virulence.
Trends Microbiol: 2017, 25(1);19-34
[PubMed:27651123] [WorldCat.org] [DOI] (I p)

Daniel Dar, Maya Shamir, J R Mellin, Mikael Koutero, Noam Stern-Ginossar, Pascale Cossart, Rotem Sorek
Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria.
Science: 2016, 352(6282);aad9822
[PubMed:27120414] [WorldCat.org] [DOI] (I p)

John A Howe, Hao Wang, Thierry O Fischmann, Carl J Balibar, Li Xiao, Andrew M Galgoci, Juliana C Malinverni, Todd Mayhood, Artjohn Villafania, Ali Nahvi, Nicholas Murgolo, Christopher M Barbieri, Paul A Mann, Donna Carr, Ellen Xia, Paul Zuck, Dan Riley, Ronald E Painter, Scott S Walker, Brad Sherborne, Reynalda de Jesus, Weidong Pan, Michael A Plotkin, Jin Wu, Diane Rindgen, John Cummings, Charles G Garlisi, Rumin Zhang, Payal R Sheth, Charles J Gill, Haifeng Tang, Terry Roemer
Selective small-molecule inhibition of an RNA structural element.
Nature: 2015, 526(7575);672-7
[PubMed:26416753] [WorldCat.org] [DOI] (I p)


RNA-based second messengers

Jan Gundlach, Christina Herzberg, Volkhard Kaever, Katrin Gunka, Tamara Hoffmann, Martin Weiß, Johannes Gibhardt, Andrea Thürmer, Dietrich Hertel, Rolf Daniel, Erhard Bremer, Fabian M Commichau, Jörg Stülke
##Title##
Sci Signal: 2017, 10(475);
[PubMed:28420751] [WorldCat.org] [DOI] (I e)

Christopher P Jones, Adrian R Ferré-D'Amaré
Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains.
Nat Struct Mol Biol: 2015, 22(9);679-85
[PubMed:26280533] [WorldCat.org] [DOI] (I p)

Fabian M Commichau, Achim Dickmanns, Jan Gundlach, Ralf Ficner, Jörg Stülke
A jack of all trades: the multiple roles of the unique essential second messenger cyclic di-AMP.
Mol Microbiol: 2015, 97(2);189-204
[PubMed:25869574] [WorldCat.org] [DOI] (I p)

Renée J St-Onge, Henry J Haiser, Mary R Yousef, Emma Sherwood, Natalia Tschowri, Mahmoud Al-Bassam, Marie A Elliot
Nucleotide second messenger-mediated regulation of a muralytic enzyme in Streptomyces.
Mol Microbiol: 2015, 96(4);779-95
[PubMed:25682701] [WorldCat.org] [DOI] (I p)

Gregory S Ducker, Joshua D Rabinowitz
ZMP: a master regulator of one-carbon metabolism.
Mol Cell: 2015, 57(2);203-4
[PubMed:25616065] [WorldCat.org] [DOI] (I p)


Ribozymes


Protein- or tRNA-controlled RNA switches


RNA thermometers

Satya Narayan, Mamta H Kombrabail, Sudipta Das, Himanshu Singh, Kandala V R Chary, Basuthkar J Rao, Guruswamy Krishnamoorthy
Site-specific fluorescence dynamics in an RNA 'thermometer' reveals the role of ribosome binding in its temperature-sensitive switch function.
Nucleic Acids Res: 2015, 43(1);493-503
[PubMed:25477380] [WorldCat.org] [DOI] (I p)


The RNA world and evolution


RNA modification


RNA degradation/ processing


CRISPR/Cas: Science



CRISPR/Cas: Application