Difference between revisions of "YxjH"
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU38950&redirect=T BSU38950] | ||
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxjH.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxjH.html] | ||
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU38950&redirect=T BSU38950] | ||
* '''Structure:''' [http://pdb.org/pdb/explore/explore.do?structureId=1ypx 1YPX] (the enzyme from ''Listeria monocytogenes'', 50% identity) | * '''Structure:''' [http://pdb.org/pdb/explore/explore.do?structureId=1ypx 1YPX] (the enzyme from ''Listeria monocytogenes'', 50% identity) | ||
Revision as of 15:10, 2 April 2014
- Description: putative methionine synthase
| Gene name | yxjH |
| Synonyms | |
| Essential | no |
| Product | putative methionine synthase |
| Function | unknown |
| Gene expression levels in SubtiExpress: yxjH | |
| Metabolic function and regulation of this protein in SubtiPathways: yxjH | |
| MW, pI | 38 kDa, 5.085 |
| Gene length, protein length | 1020 bp, 340 aa |
| Immediate neighbours | yxjI, yxjG |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
biosynthesis/ acquisition of amino acids
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU38950
Phenotypes of a mutant
Database entries
- BsubCyc: BSU38950
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): YxjG
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
Database entries
- BsubCyc: BSU38950
- Structure: 1YPX (the enzyme from Listeria monocytogenes, 50% identity)
- UniProt: P42319
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulatory mechanism:
- S-box: transcription termination/ antitermination, the S-box riboswitch binds S-adenosylmethionine resulting in termination PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Ana Gutiérrez-Preciado, Tina M Henkin, Frank J Grundy, Charles Yanofsky, Enrique Merino
Biochemical features and functional implications of the RNA-based T-box regulatory mechanism.
Microbiol Mol Biol Rev: 2009, 73(1);36-61
[PubMed:19258532]
[WorldCat.org]
[DOI]
(I p)
Jerneja Tomsic, Brooke A McDaniel, Frank J Grundy, Tina M Henkin
Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro.
J Bacteriol: 2008, 190(3);823-33
[PubMed:18039762]
[WorldCat.org]
[DOI]
(I p)
Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147]
[WorldCat.org]
[DOI]
(P p)
F J Grundy, T M Henkin
The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria.
Mol Microbiol: 1998, 30(4);737-49
[PubMed:10094622]
[WorldCat.org]
[DOI]
(P p)
