Difference between revisions of "TrmFO"
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* '''Structure:''' | * '''Structure:''' | ||
| + | ** [http://www.pdb.org/pdb/explore/explore.do?structureId=3G5S 3G5S] (TrmFO from ''Thermus thermophilus'', 54% identity, 79% similarity) {{PubMed|19416846}} | ||
* '''UniProt:''' [http://www.uniprot.org/uniprot/P39815 P39815] | * '''UniProt:''' [http://www.uniprot.org/uniprot/P39815 P39815] | ||
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=References= | =References= | ||
| − | <pubmed> 16027442 20412857 21846722 24228791 21561081 23157377 23095745 </pubmed> | + | <pubmed> 16027442 20412857 21846722 24228791 21561081 23157377 23095745 19416846 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 09:09, 19 November 2013
- Description: flavoprotein, tRNA:m(5)U-54 methyltransferase, glucose-inhibited division protein
| Gene name | trmFO |
| Synonyms | ylyC, gid |
| Essential | no |
| Product | tRNA:m(5)U-54 methyltransferase |
| Function | tRNA modification |
| Gene expression levels in SubtiExpress: trmFO | |
| MW, pI | 47 kDa, 5.767 |
| Gene length, protein length | 1305 bp, 435 aa |
| Immediate neighbours | topA, codV |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU16130
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: catalyzes the folate-dependent C(5)-methylation of uridine at position 54 in the TpsiC loop of tRNA
- Protein family: TrmFO subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Effectors of protein activity:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- UniProt: P39815
- KEGG entry: [2]
- E.C. number: 2.1.1.74
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
