Difference between revisions of "SigF"
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==The [[SigF regulon]]== | ==The [[SigF regulon]]== | ||
<pubmed>16497325</pubmed> | <pubmed>16497325</pubmed> | ||
+ | ==Modeling of [[SigF]] activation== | ||
+ | <pubmed> 24067622 22312331 20298743</pubmed> | ||
==Original Publications== | ==Original Publications== | ||
− | <pubmed>10503549,8358793,7570023,9555886,3007937,8460142,9077448,10323866,10869437,7768847,14744853,8759874,10864495,1744043,16824103,11701124,1902463,8171000,1904527,15351644,15882622,8764398,8764397,9826498,9826499,2492512,1629150,12676949,7592342,11684022,8846916,1948031,8126438, 3114419,12081956,9150232,15205443,9004507,8168129,2123551,8824593,19390092,17498739,8021191,1556084,15687200,12107147, | + | <pubmed>10503549,8358793,7570023,9555886,3007937,8460142,9077448,10323866,10869437,7768847,14744853,8759874,10864495,1744043,16824103,11701124,1902463,8171000,1904527,15351644,15882622,8764398,8764397,9826498,9826499,2492512,1629150,12676949,7592342,11684022,8846916,1948031,8126438, 3114419,12081956,9150232,15205443,9004507,8168129,2123551,8824593,19390092,17498739,8021191,1556084,15687200,12107147, 18208527 10049355 23169620,21037003,20817675,21935351,</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] |
Revision as of 08:05, 27 September 2013
- Description: RNA polymerase forespore-specific (early) sigma factor SigF
Gene name | sigF |
Synonyms | spoIIAC |
Essential | no |
Product | RNA polymerase forespore-specific (early) sigma factor SigF |
Function | transcription of sporulation genes (early forespore) |
Gene expression levels in SubtiExpress: sigF | |
Interactions involving this protein in SubtInteract: SigF | |
Metabolic function and regulation of this protein in SubtiPathways: Stress | |
MW, pI | 29 kDa, 5.078 |
Gene length, protein length | 765 bp, 255 aa |
Immediate neighbours | spoVAA, spoIIAB |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
transcription, sigma factors and their control, sporulation proteins, membrane proteins
This gene is a member of the following regulons
AbrB regulon, SigF regulon, SigG regulon, SigH regulon, SinR regulon, Spo0A regulon
The SigF regulon
The gene
Basic information
- Locus tag: BSU23450
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: sigma-70 factor family (according to Swiss-Prot)
- Paralogous protein(s): SigG
Genes controlled by SigF
dacF-spoIIAA-spoIIAB-sigF, sigG, pbpF, yphA-seaA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure: 1L0O (complex with SpoIIAB, Geobacillus stearothermophilus)
- UniProt: P07860
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
- Charles Moran, Emory University, NC, USA homepage
Your additional remarks
References
Reviews
The SigF regulon
Modeling of SigF activation
Georgios Fengos, Dagmar Iber
Prediction stability in a data-based, mechanistic model of σF regulation during sporulation in Bacillus subtilis.
Sci Rep: 2013, 3;2755
[PubMed:24067622]
[WorldCat.org]
[DOI]
(I e)
Dagmar Iber
Inferring Biological Mechanisms by Data-Based Mathematical Modelling: Compartment-Specific Gene Activation during Sporulation in Bacillus subtilis as a Test Case.
Adv Bioinformatics: 2011, 2011;124062
[PubMed:22312331]
[WorldCat.org]
[DOI]
(I p)
Jin Hwan Do, Masao Nagasaki, Satoru Miyano
The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis.
Biosystems: 2010, 100(3);178-84
[PubMed:20298743]
[WorldCat.org]
[DOI]
(I p)
Original Publications