YlyB

• Description: similar to pseudouridylate synthase
  
  

Gene name	ylyB
Synonyms	ylmL
Essential	no
Product	unknown
Function	unknown
Gene expression levels in SubtiExpress: ylyB
MW, pI	33 kDa, 5.431
Gene length, protein length	909 bp, 303 aa
Immediate neighbours	lspA, pyrR
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

translation

The gene

Basic information

• Locus tag: BSU15460

Database entries

• BsubCyc: BSU15460

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity: RNA uridine = RNA pseudouridine (according to Swiss-Prot)

• Protein family: S4 RNA-binding domain (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• BsubCyc: BSU15460

• Structure: 2I82 (the E. coli enzyme) PubMed

• UniProt: Q45480

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: ylyB PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Charmaine Hoang, Junjun Chen, Caroline A Vizthum, Jason M Kandel, Christopher S Hamilton, Eugene G Mueller, Adrian R Ferré-D'Amaré
Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure.
Mol Cell: 2006, 24(4);535-45
[PubMed:17188032] [WorldCat.org] [DOI] (P p)