Difference between revisions of "YdiO"

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Revision as of 12:41, 16 May 2013

  • Description: similar to DNA-3-methyladenine glycosidase II

Gene name ydiO
Synonyms
Essential yes PubMed
Product unknown
Function BsuM DNA modification
Gene expression levels in SubtiExpress: ydiO
MW, pI 48 kDa, 7.659
Gene length, protein length 1281 bp, 427 aa
Immediate neighbours ydzV, ydiP
Sequences Protein DNA DNA_with_flanks
Genetic context
YdiO context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdiO expression.png
























Categories containing this gene/protein

DNA restriction/ modification, essential genes

This gene is a member of the following regulons

LexA regulon

The gene

Basic information

  • Locus tag: BSU06060

Phenotypes of a mutant

essential PubMed, mutation is only possible in a ydiR, ydiS, or ydjA background (i. e., in the absence of the BsuM DNA restriction system) PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Tomoko Maehara, Mitsuhiro Itaya, Mitsuo Ogura, Teruo Tanaka
Effect of Bacillus subtilis BsuM restriction-modification on plasmid transfer by polyethylene glycol-induced protoplast fusion.
FEMS Microbiol Lett: 2011, 325(1);49-55
[PubMed:22092861] [WorldCat.org] [DOI] (I p)

Nora Au, Elke Kuester-Schoeck, Veena Mandava, Laura E Bothwell, Susan P Canny, Karen Chachu, Sierra A Colavito, Shakierah N Fuller, Eli S Groban, Laura A Hensley, Theresa C O'Brien, Amish Shah, Jessica T Tierney, Louise L Tomm, Thomas M O'Gara, Alexi I Goranov, Alan D Grossman, Charles M Lovett
Genetic composition of the Bacillus subtilis SOS system.
J Bacteriol: 2005, 187(22);7655-66
[PubMed:16267290] [WorldCat.org] [DOI] (P p)

Hideyuki Ohshima, Satoshi Matsuoka, Kei Asai, Yoshito Sadaie
Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg.
J Bacteriol: 2002, 184(2);381-9
[PubMed:11751814] [WorldCat.org] [DOI] (P p)

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