Difference between revisions of "SdpA"

From SubtiWiki
Jump to: navigation, search
Line 22: Line 22:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvaV]]'', ''[[sdpB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvaV]]'', ''[[sdpB]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33750 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33750 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33750 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33750 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33750 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33750 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvaW_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvaW_context.gif]]

Revision as of 11:17, 14 May 2013

  • Description: maybe involved in cannibalism of siblings

Gene name sdpA
Synonyms yvaW
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: sdpA
MW, pI 18 kDa, 9.766
Gene length, protein length 474 bp, 158 aa
Immediate neighbours yvaV, sdpB
Sequences Protein DNA DNA_with_flanks
Genetic context
YvaW context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SdpA expression.png
























Categories containing this gene/protein

toxins, antitoxins and immunity against toxins

This gene is a member of the following regulons

AbrB regulon, Rok regulon, Spo0A regulon

The gene

Basic information

  • Locus tag: BSU33750

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: repressed by glucose (8-fold) PubMed
  • Additional information:
    • the amount of the mRNA is substantially decreased upon depletion of RNase Y PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Original Publications

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 81(6): 1459-1473. 
PubMed:21815947