Difference between revisions of "YabO"
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|style="background:#ABCDEF;" align="center"|'''Function''' || recycling of stalled ribosomes | |style="background:#ABCDEF;" align="center"|'''Function''' || recycling of stalled ribosomes | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00590 yabO] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 9 kDa, 10.135 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 9 kDa, 10.135 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabN]]'', ''[[yabP]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabN]]'', ''[[yabP]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00590 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00590 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00590 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yabO_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yabO_context.gif]] | ||
Revision as of 11:56, 13 May 2013
- Description: similar to heat shock protein Hsp15
| Gene name | yabO |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | recycling of stalled ribosomes |
| Gene expression levels in SubtiExpress: yabO | |
| MW, pI | 9 kDa, 10.135 |
| Gene length, protein length | 258 bp, 86 aa |
| Immediate neighbours | yabN, yabP |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU00590
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
- The E.coli homolog: hslR
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P37557
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Linhua Jiang, Christiane Schaffitzel, Rouven Bingel-Erlenmeyer, Nenad Ban, Philipp Korber, Roman I Koning, Daniël C de Geus, Jasper R Plaisier, Jan Pieter Abrahams
Recycling of aborted ribosomal 50S subunit-nascent chain-tRNA complexes by the heat shock protein Hsp15.
J Mol Biol: 2009, 386(5);1357-67
[PubMed:19013177]
[WorldCat.org]
[DOI]
(I p)
Kei Asai, Hiromu Takamatsu, Megumi Iwano, Takeko Kodama, Kazuhito Watabe, Naotake Ogasawara
The Bacillus subtilis yabQ gene is essential for formation of the spore cortex.
Microbiology (Reading): 2001, 147(Pt 4);919-927
[PubMed:11283287]
[WorldCat.org]
[DOI]
(P p)
B L Staker, P Korber, J C Bardwell, M A Saper
Structure of Hsp15 reveals a novel RNA-binding motif.
EMBO J: 2000, 19(4);749-57
[PubMed:10675344]
[WorldCat.org]
[DOI]
(P p)
P Korber, J M Stahl, K H Nierhaus, J C Bardwell
Hsp15: a ribosome-associated heat shock protein.
EMBO J: 2000, 19(4);741-8
[PubMed:10675343]
[WorldCat.org]
[DOI]
(P p)
P Korber, T Zander, D Herschlag, J C Bardwell
A new heat shock protein that binds nucleic acids.
J Biol Chem: 1999, 274(1);249-56
[PubMed:9867837]
[WorldCat.org]
[DOI]
(P p)
S E Chuang, F R Blattner
Characterization of twenty-six new heat shock genes of Escherichia coli.
J Bacteriol: 1993, 175(16);5242-52
[PubMed:8349564]
[WorldCat.org]
[DOI]
(P p)
