Difference between revisions of "YcdA"
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|style="background:#ABCDEF;" align="center"|'''Function''' || swarming motility | |style="background:#ABCDEF;" align="center"|'''Function''' || swarming motility | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02780 ycdA] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 39 kDa, 4.706 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 39 kDa, 4.706 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yccK]]'', ''[[ycdB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yccK]]'', ''[[ycdB]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02780 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02780 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02780 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ycdA_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ycdA_context.gif]] | ||
Revision as of 12:04, 13 May 2013
- Description: lipoprotein, required for swarming motility
| Gene name | ycdA |
| Synonyms | |
| Essential | no |
| Product | lipoprotein |
| Function | swarming motility |
| Gene expression levels in SubtiExpress: ycdA | |
| MW, pI | 39 kDa, 4.706 |
| Gene length, protein length | 1062 bp, 354 aa |
| Immediate neighbours | yccK, ycdB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
membrane proteins, motility and chemotaxis
This gene is a member of the following regulons
Abh regulon, AbrB regulon, DegU regulon
The gene
Basic information
- Locus tag: BSU02780
Phenotypes of a mutant
- reduced swarming motility PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34538
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: ycdA PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
- The mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Mitsuo Ogura, Kensuke Tsukahara
SwrA regulates assembly of Bacillus subtilis DegU via its interaction with N-terminal domain of DegU.
J Biochem: 2012, 151(6);643-55
[PubMed:22496484]
[WorldCat.org]
[DOI]
(I p)
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711]
[WorldCat.org]
[DOI]
(I p)
