Difference between revisions of "YteR"
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|style="background:#ABCDEF;" align="center"|'''Function''' || intracellular degradation of disaccharides generated by [[YesX]] | |style="background:#ABCDEF;" align="center"|'''Function''' || intracellular degradation of disaccharides generated by [[YesX]] | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30120 yteR] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 5.87 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 5.87 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yteS]]'', ''[[yteP]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yteS]]'', ''[[yteP]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU30120 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU30120 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU30120 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yteR_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yteR_context.gif]] | ||
Revision as of 13:38, 13 May 2013
- Description: galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by YesX
| Gene name | yteR |
| Synonyms | |
| Essential | no |
| Product | galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by YesX |
| Function | intracellular degradation of disaccharides generated by YesX |
| Gene expression levels in SubtiExpress: yteR | |
| MW, pI | 42 kDa, 5.87 |
| Gene length, protein length | 1119 bp, 373 aa |
| Immediate neighbours | yteS, yteP |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU30120
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: glycosyl hydrolase 105 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- UniProt: O34559
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation: induced by rhamnogalacturonan PubMed
- Regulatory mechanism:
- Additional information: the mRNA is very stable (half-life > 15 min) PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691]
[WorldCat.org]
[DOI]
(P p)
Takafumi Itoh, Akihito Ochiai, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate.
Biochem Biophys Res Commun: 2006, 347(4);1021-9
[PubMed:16870154]
[WorldCat.org]
[DOI]
(P p)
Takafumi Itoh, Akihito Ochiai, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide.
J Mol Biol: 2006, 360(3);573-85
[PubMed:16781735]
[WorldCat.org]
[DOI]
(P p)
G Hambraeus, C von Wachenfeldt, L Hederstedt
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs.
Mol Genet Genomics: 2003, 269(5);706-14
[PubMed:12884008]
[WorldCat.org]
[DOI]
(P p)
