Difference between revisions of "DgrA"
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| − | * '''Description:''' | + | * '''Description:''' c-di-GMP receptor protein, inhibits motility during entry into [[sporulation]] <br/><br/> |
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || c-di-GMP receptor protein |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[MotA]] activity |
| + | |- | ||
| + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YpfA YpfA] | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 7.878 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 7.878 | ||
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<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
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<br/><br/> | <br/><br/> | ||
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=== Additional information=== | === Additional information=== | ||
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* '''Domains:''' | * '''Domains:''' | ||
| + | ** contains a C-terminal PilZ domain {{PubMed|22821967}} | ||
* '''Modification:''' | * '''Modification:''' | ||
* '''Cofactor(s):''' | * '''Cofactor(s):''' | ||
| + | ** c-di-GMP {{PubMed|22821967}} | ||
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| + | ** binding of c-di-GMP stimulates the inhibitory interaction with [[MotA]] {{PubMed|22821967}} | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| + | ** [[YpfA]]-[[MotA]] {{PubMed|22821967}} | ||
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
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=References= | =References= | ||
| − | + | '''Additional publications:''' {{PubMed|22821967}} | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 10:38, 25 July 2012
- Description: c-di-GMP receptor protein, inhibits motility during entry into sporulation
| Gene name | ypfA |
| Synonyms | jofA |
| Essential | no |
| Product | c-di-GMP receptor protein |
| Function | control of MotA activity |
| Interactions involving this protein in SubtInteract: YpfA | |
| MW, pI | 24 kDa, 7.878 |
| Gene length, protein length | 651 bp, 217 aa |
| Immediate neighbours | ypfB, ypeB |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU22910
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- contains a C-terminal PilZ domain PubMed
- Modification:
- Cofactor(s):
- c-di-GMP PubMed
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P38491
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
