Difference between revisions of "YmcB"
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|colspan="2" | '''Genetic context''' <br/> [[Image:YmcB_context.png]] | |colspan="2" | '''Genetic context''' <br/> [[Image:YmcB_context.png]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
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| + | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ymcB_1772843_1774372_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:ymcB_expression.png|500px]] | ||
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Revision as of 10:02, 19 April 2012
- Description: tRNA methylthiotransferase
| Gene name | ymcB |
| Synonyms | |
| Essential | no |
| Product | tRNA methylthiotransferase |
| Function | tRNA maturation |
| MW, pI | 57 kDa, 6.873 |
| Gene length, protein length | 1527 bp, 509 aa |
| Immediate neighbours | kbl, ymcA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17010
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: modifies N(6)-isopentenyladenosine (i(6)A) to 2-methylthio-N(6)-isopentenyladenosine (ms(2)i(6)A) in tRNA PubMed
- Protein family: MiaB subfamily (according to Swiss-Prot)
- Paralogous protein(s): YqeV
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cytoplasm (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31778
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant: GP1109 (spc), available in Stülke lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Brian P Anton, Susan P Russell, Jason Vertrees, Simon Kasif, Elisabeth A Raleigh, Patrick A Limbach, Richard J Roberts
Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis.
Nucleic Acids Res: 2010, 38(18);6195-205
[PubMed:20472640]
[WorldCat.org]
[DOI]
(I p)
