Difference between revisions of "YybN"
| Line 97: | Line 97: | ||
* '''Operon:''' ''[[yybN]]-[[yybM]]-[[yybL]]-[[yybK]]-[[yybJ]]'' (according to [[http://dbtbs.hgc.jp/COG/prom/yybNMLKJ.html DBTBS]]) | * '''Operon:''' ''[[yybN]]-[[yybM]]-[[yybL]]-[[yybK]]-[[yybJ]]'' (according to [[http://dbtbs.hgc.jp/COG/prom/yybNMLKJ.html DBTBS]]) | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yybN_4173114_4173551_1 yybN] {{PubMed|22383849}} |
| + | |||
| + | * '''Sigma factor:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 106: | Line 108: | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| − | ** the mRNA has a long 5' leader region. This may indicate RNA-based regulation {{PubMed|20525796}} | + | ** the mRNA has a long 5' leader region. This may indicate RNA-based regulation {{PubMed|20525796}} |
=Biological materials = | =Biological materials = | ||
Revision as of 10:32, 17 April 2012
- Description: unknown
| Gene name | yybN |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 16 kDa, 9.532 |
| Gene length, protein length | 435 bp, 145 aa |
| Immediate neighbours | yyzL, yybM |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU40580
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P37490
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Additional information:
- the mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
Mark Albano, Wiep Klaas Smits, Linh T Y Ho, Barbara Kraigher, Ines Mandic-Mulec, Oscar P Kuipers, David Dubnau
The Rok protein of Bacillus subtilis represses genes for cell surface and extracellular functions.
J Bacteriol: 2005, 187(6);2010-9
[PubMed:15743949]
[WorldCat.org]
[DOI]
(P p)
