Difference between revisions of "Main Page"

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<big>Welcome to '''''Subti''Wiki'''! </big> - ''Bacillus subtilis'' annotation the "wiki" way!<br/>
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[[File:Start_page_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/]]
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[[File:Playground_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Playground]]
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[[File:Wish_List_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Wish_List]]
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<br/>
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<big>'''Contact:'''</big> [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]
  
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<small>   1f5a64cc87 </small>
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<br/>
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<small></small>
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<big>'''Upcoming events:'''</big>
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<small></small>
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* '''March 14 - 16, 2011:''' The European [[BACELL meeting]] will take place in Göttingen, Germany. [mailto:jstuelk@gwdg.de contact], [[BACELL meeting|website]]
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<small></small>
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* '''June 2011:''' The 16th International Conference on Bacilli (aka 6th International Conference on Gram-positive Microorganisms) will take place in lovely Tuscany, Italy. [http://www.grampositiveconference.org/index.html Conference website]
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<small></small>
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<br/>
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<big>'''News in ''Subti''Wiki:'''</big>
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* '''December 2010:''' the beta version of an interactive protein-protein interaction map is available [http://cellpublisher.gobics.de/subtinteract/interactionList/PtsH here] (just replace "PtsH" in the browser line by the protein of your interest)
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* '''December 2010:''' [http://cellpublisher.gobics.de/scp.html SubtiCellPublisher] allows the conversion of CellDesigner diagrams to navigatable presentations in the style of [[SubtiPathways]]
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* '''December 2010:''' all genes are linked to [[regulons]], and the pages of the [[regulons]] provide an overview on all genes that are members of this specific regulon.
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* '''December 2010:''' all genes/proteins are linked to [[categories]], and the pages of the [[categories]] provide an overview on all genes/proteins that are members of this specific category.
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* '''November 2010:''' a beta version of [http://subtiwiki.uni-goettingen.de/pathways/SubtInteract/demo_mitlinks/ SubtInteract] is online
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* '''August 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources], [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis], [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling], and [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] were uploaded to [[SubtiPathways]]
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* '''July 2010:''' A manually curated functional classification of ''Bacillus'' genes can be downloaded [http://www.subtiwiki.uni-goettingen.de/otherFiles/classification.zip here].
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* '''March 2010:''' novel [[plasmids]] for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, [[pGP1087]] and [[pGP1331]])
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<br/>
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{| border="0" cellpadding="1"
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|width="300"|<big>'''Genes''' (examples)</big>
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|width="300"|<big>'''Additional pages'''</big>
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|- style="height:20px"
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| ''[[spo0A]]'' || '''[http://subtipathways.uni-goettingen.de ''Subti''Pathways]'''
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|-
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| ''[[glnA]]'' ||  '''[[Lists of genes, proteins and RNAs]]'''
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|-
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| ''[[rny]]'' ||  '''[[Categories]]'''
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|-
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| ''[[psdA]]'' || '''[[Regulons]]'''
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|-
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| ''[[pckA]]'' || '''[[methods]]'''
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|-
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| ''[[dnaA]]'' ||  '''[[metabolism]]'''
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|-
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| ''[[rnpA]]'' ||  '''[[protein-protein interactions]]'''
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|-
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| ''[[sigB]]'' || '''[[genome-wide analyses]]'''
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|-
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| ''[[ptkA]]'' || '''[[list of plasmids]]'''
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|-
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| ''[[mreC]]'' || '''[[labs working on Bacillus|labs working on ''Bacillus'']]'''
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|-
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| ''[[ccpA]]'' || '''[[the people behind SubtiWiki|the people behind ''Subti''Wiki]]'''
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|-
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| ''[[sr1]]'' || '''[[templates]]'''
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|-
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|  || '''[http://www.subtiwiki.uni-goettingen.de/otherFiles/classification.zip Classification of genes]'''
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|}
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<br>
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<big>'''Publications describing ''Subti''Wiki and ''Subti''Pathways:'''</big>
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<div style="width:73%"><pubmed> 20157485 19959575 </pubmed></div>
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<br><br><br><br><br><br>

Revision as of 03:05, 3 February 2011

Welcome to SubtiWiki! - Bacillus subtilis annotation the "wiki" way!

Start page small.png
Playground small.png
Wish List small.png


Contact: General Microbiology, University of Göttingen, send mail


Upcoming events:

  • March 14 - 16, 2011: The European BACELL meeting will take place in Göttingen, Germany. contact, website
  • June 2011: The 16th International Conference on Bacilli (aka 6th International Conference on Gram-positive Microorganisms) will take place in lovely Tuscany, Italy. Conference website


News in SubtiWiki:

  • December 2010: the beta version of an interactive protein-protein interaction map is available here (just replace "PtsH" in the browser line by the protein of your interest)
  • December 2010: SubtiCellPublisher allows the conversion of CellDesigner diagrams to navigatable presentations in the style of SubtiPathways
  • December 2010: all genes are linked to regulons, and the pages of the regulons provide an overview on all genes that are members of this specific regulon.
  • December 2010: all genes/proteins are linked to categories, and the pages of the categories provide an overview on all genes/proteins that are members of this specific category.
  • November 2010: a beta version of SubtInteract is online
  • August 2010: several new pathway maps including Utilization of other nitrogen sources, Biotin synthesis, Murein recycling, and Protein secretion were uploaded to SubtiPathways
  • July 2010: A manually curated functional classification of Bacillus genes can be downloaded here.
  • March 2010: novel plasmids for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, pGP1087 and pGP1331)


Genes (examples) Additional pages
spo0A SubtiPathways
glnA Lists of genes, proteins and RNAs
rny Categories
psdA Regulons
pckA methods
dnaA metabolism
rnpA protein-protein interactions
sigB genome-wide analyses
ptkA list of plasmids
mreC labs working on Bacillus
ccpA the people behind SubtiWiki
sr1 templates
Classification of genes


Publications describing SubtiWiki and SubtiPathways:

Lope A Flórez, Sebastian F Roppel, Arne G Schmeisky, Christoph R Lammers, Jörg Stülke
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki.
Database (Oxford): 2009, 2009;bap012
[PubMed:20157485] [WorldCat.org] [DOI] (I p)

Christoph R Lammers, Lope A Flórez, Arne G Schmeisky, Sebastian F Roppel, Ulrike Mäder, Leendert Hamoen, Jörg Stülke
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis.
Microbiology (Reading): 2010, 156(Pt 3);849-859
[PubMed:19959575] [WorldCat.org] [DOI] (I p)







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