Difference between revisions of "Sandbox"

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(Dominik Tödter)
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==Systematics==
 
==Systematics==
 
<pubmed>19693078 19656368 17370266 16138096 </pubmed>
 
<pubmed>19693078 19656368 17370266 16138096 </pubmed>
 +
 +
==Mareike Kunze==
 +
<pubmed>20515935 19965476  </pubmed>
 +
Außerdem das MPN420-Paper
  
 
==Marcus Richter==
 
==Marcus Richter==
 
<pubmed> 19054118 20351052 </pubmed>
 
<pubmed> 19054118 20351052 </pubmed>
 +
Außerdem das YmdB-Paper
  
 
==Dominik Tödter {{PubMed|20572937,20709848,14991003 }}==
 
==Dominik Tödter {{PubMed|20572937,20709848,14991003 }}==

Revision as of 18:13, 9 November 2010

Mycoplasmas as minimal organisms


Identification of a minimal gene set


Steps on the way to an artificial organism


Metabolism

Frederik M Meyer, Jan Gerwig, Elke Hammer, Christina Herzberg, Fabian M Commichau, Uwe Völker, Jörg Stülke
Physical interactions between tricarboxylic acid cycle enzymes in Bacillus subtilis: evidence for a metabolon.
Metab Eng: 2011, 13(1);18-27
[PubMed:20933603] [WorldCat.org] [DOI] (I p)

Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M Deacon, John Wooley, Scott A Lesley, Ian A Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik
Three-dimensional structural view of the central metabolic network of Thermotoga maritima.
Science: 2009, 325(5947);1544-9
[PubMed:19762644] [WorldCat.org] [DOI] (I p)

Bryson D Bennett, Elizabeth H Kimball, Melissa Gao, Robin Osterhout, Stephen J Van Dien, Joshua D Rabinowitz
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli.
Nat Chem Biol: 2009, 5(8);593-9
[PubMed:19561621] [WorldCat.org] [DOI] (I p)

Wataru Iwasaki, Toshihisa Takagi
Rapid pathway evolution facilitated by horizontal gene transfers across prokaryotic lineages.
PLoS Genet: 2009, 5(3);e1000402
[PubMed:19266023] [WorldCat.org] [DOI] (I p)

Fabian M Commichau, Fabian M Rothe, Christina Herzberg, Eva Wagner, Daniel Hellwig, Martin Lehnik-Habrink, Elke Hammer, Uwe Völker, Jörg Stülke
Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing.
Mol Cell Proteomics: 2009, 8(6);1350-60
[PubMed:19193632] [WorldCat.org] [DOI] (I p)

Armen Y Mulkidjanian, Eugene V Koonin, Kira S Makarova, Sergey L Mekhedov, Alexander Sorokin, Yuri I Wolf, Alexis Dufresne, Frédéric Partensky, Henry Burd, Denis Kaznadzey, Robert Haselkorn, Michael Y Galperin
The cyanobacterial genome core and the origin of photosynthesis.
Proc Natl Acad Sci U S A: 2006, 103(35);13126-31
[PubMed:16924101] [WorldCat.org] [DOI] (P p)

M Ribbe, D Gadkari, O Meyer
N2 fixation by Streptomyces thermoautotrophicus involves a molybdenum-dinitrogenase and a manganese-superoxide oxidoreductase that couple N2 reduction to the oxidation of superoxide produced from O2 by a molybdenum-CO dehydrogenase.
J Biol Chem: 1997, 272(42);26627-33
[PubMed:9334244] [WorldCat.org] [DOI] (P p)


Systematics


Mareike Kunze

S M Szczepanek, S Frasca, V L Schumacher, X Liao, M Padula, S P Djordjevic, S J Geary
Identification of lipoprotein MslA as a neoteric virulence factor of Mycoplasma gallisepticum.
Infect Immun: 2010, 78(8);3475-83
[PubMed:20515935] [WorldCat.org] [DOI] (I p)

Eva Yus, Tobias Maier, Konstantinos Michalodimitrakis, Vera van Noort, Takuji Yamada, Wei-Hua Chen, Judith A H Wodke, Marc Güell, Sira Martínez, Ronan Bourgeois, Sebastian Kühner, Emanuele Raineri, Ivica Letunic, Olga V Kalinina, Michaela Rode, Richard Herrmann, Ricardo Gutiérrez-Gallego, Robert B Russell, Anne-Claude Gavin, Peer Bork, Luis Serrano
Impact of genome reduction on bacterial metabolism and its regulation.
Science: 2009, 326(5957);1263-8
[PubMed:19965476] [WorldCat.org] [DOI] (I p)

Außerdem das MPN420-Paper

Marcus Richter

Yunrong Chai, Thomas Norman, Roberto Kolter, Richard Losick
An epigenetic switch governing daughter cell separation in Bacillus subtilis.
Genes Dev: 2010, 24(8);754-65
[PubMed:20351052] [WorldCat.org] [DOI] (I p)

Daniel Lopez, Hera Vlamakis, Roberto Kolter
Generation of multiple cell types in Bacillus subtilis.
FEMS Microbiol Rev: 2009, 33(1);152-63
[PubMed:19054118] [WorldCat.org] [DOI] (P p)

Außerdem das YmdB-Paper

Dominik Tödter PubMed